PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002654.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79674.9 Da    PI: 5.6433
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002654.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1859114156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++e+e++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  Cse_sc002654.1_g020.1  59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMK 114
                            688999***********************************************998 PP
2START222.11.8e-692464661206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela +a++el+++a+a++p+Wv+ s    e + ++e++++f+++ +       +ea+r+s+vv+m++ +lve+l+d++ qW++ +   
  Cse_sc002654.1_g020.1 246 ELAVAAMEELIRMAQAGDPLWVQNSdtssEALSEEEYMRTFPRGIGpkplgLISEASRESAVVIMNHITLVEILMDVN-QWSNVFSgi 332
                            57899********************999999************999********************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a+tlev+s+g      galq m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ +      s+ R++++pSg+li++
  Cse_sc002654.1_g020.1 333 vsRAMTLEVLSTGvagnynGALQAMTAEYQVPSPLVPtRENYFVRYCKQHNDGTWAVVDVSLDNLRTS----SISRCRRRPSGCLIQE 416
                            ****************************************************************9985....58************** PP

                            ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwvehv++++r++ +++rslv sgl +gak+wvatl+rqce+
  Cse_sc002654.1_g020.1 417 LPNGYSKVTWVEHVEVDDRSVNEIYRSLVTSGLGFGAKRWVATLERQCER 466
                            ************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MFQPNMFESH HHILDISSKT SENQLDMLRD DDYESKSGTD IMEAPSGDEQ DPNQHPNKKK  60
RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLTLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNENE KLRSENIRYK EALANATCPN CGGPAAIGEM SFDEQQLRIE NTRLHEEIDR  180
ISGIAAKYVG KLSYPNMPSH GPTRSIDLGV PNFGPQQGMV GDMYGANDLL RSVSGPTEAD  240
KPIIIELAVA AMEELIRMAQ AGDPLWVQNS DTSSEALSEE EYMRTFPRGI GPKPLGLISE  300
ASRESAVVIM NHITLVEILM DVNQWSNVFS GIVSRAMTLE VLSTGVAGNY NGALQAMTAE  360
YQVPSPLVPT RENYFVRYCK QHNDGTWAVV DVSLDNLRTS SISRCRRRPS GCLIQELPNG  420
YSKVTWVEHV EVDDRSVNEI YRSLVTSGLG FGAKRWVATL ERQCERLASV MANNIPAGDV  480
GVITTPEGRK SMLKLAERMV LSFCSGVGAS TAHTWTTLSG SGADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPIQPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESS SDSTGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL  660
PDGPGRQEGG NPEVGTGGSL LTVAFQILVD SIPTAKLSLG SVATVNSLIK CTVERIKAAV  720
ASP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein