PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002569.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 294aa    MW: 33928.7 Da    PI: 6.4117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002569.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-141253345
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           ienk +r++ f +R++g+ KKA+EL +LCd++v++ ifs +++
  Cse_sc002569.1_g020.1 12 IENK-KRNIAFKQRKAGLVKKASELAILCDVNVSMFIFSDQQE 53
                           5555.6889******************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGRKKVSMVP IIENKKRNIA FKQRKAGLVK KASELAILCD VNVSMFIFSD QQENNPEIFP  60
PDDPHKLHDS IHLYKSKLAS EPGKIKRYGL WDFFKDRKNK AEVELVRAKE RNLEAKYPTR  120
FGFLDNSSEG ELSNFAFGLE KKIDQVKRRI EFLRKVPKIE NLDVEDSSCT MMRHIGYNDF  180
VFNHVGYSES SNPISIMDML LKSEDENEYL YPMELYVDNQ KMLSMQSSNP NSIITSEGDS  240
KCYDSENSGL PPLLLSTMVQ PEELPLMHMN SFLSSSFPSH VLEYETSGYK YLAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-13M-type_MADS family protein