PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002311.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 492aa    MW: 55197.5 Da    PI: 6.434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002311.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.55.5e-1071314871374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                            l++ L+ecA a+s ++l +a++++ +l ++asp++ +  +R++ayf++ +a+r+++s+ + ++ l+         +    a+++f+++
  Cse_sc002311.1_g020.1 131 LISILFECAVAISVDNLGEAHRMVLELTQMASPYAsSCGERVVAYFAKSMASRVVNSWLGFCSPLTNH-------KLIHGAFQVFNNI 211
                            5789*******************************66779****************999998655433.......4456799****** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            sP++kf+h+t NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s e l etg++L++fA++lg+ 
  Cse_sc002311.1_g020.1 212 SPFVKFAHFTSNQAILEAFQRRDRVHIVDLDIMQGLQWPALFHILATRMEGPPHVRMTGMGT----SMELLMETGKQLSNFAKRLGML 295
                            **************************************************************....9********************* PP

                   GRAS 176 fefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            fef+++ ak++ d+ +l++L++++g+ala+++    h+l+d +++  +    +++l+++l+P+++++veq+++h ++sFl+rf+ +l+
  Cse_sc002311.1_g020.1 296 FEFHPV-AKKFGDItDLSMLQIRRGDALAIHWLQ--HSLYDATGTDWK----TMRLLQELNPRIITLVEQDISH-GGSFLDRFVGSLH 375
                            *****6.665555449*****************9..999988888888....**********************.789********** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                            yysa+fdsl a lp++++ r+ vE+ l++rei nv+a  g  r  +  +++ Wr+ l++ GF +vp+s++  +qa+l+l++++  +gy
  Cse_sc002311.1_g020.1 376 YYSAIFDSLGAFLPNDDNSRHRVEHSLIHREINNVLAVGGPGRSGED-KFKVWRHELGRNGFLQVPMSSNSLAQAQLILNMFPpTHGY 462
                            ******************************************77665.5*************************************** PP

                   GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                            ++ + +g+l lgWk+ +L+++SaW+
  Cse_sc002311.1_g020.1 463 SLVQVDGTLRLGWKETALYTASAWT 487
                            ************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MRAGFEVVQG SLELIQPQEQ WDYNNTLGAY VSTSTTTSSV NGFSDYSSKP HVNLERPNEL  60
SEWVEHVTKT LIEDLPESES NHEEGFQTDA TMPTYDDVSP HMGETRPRKM ARGNGPDEAQ  120
FGDPSNKGLS LISILFECAV AISVDNLGEA HRMVLELTQM ASPYASSCGE RVVAYFAKSM  180
ASRVVNSWLG FCSPLTNHKL IHGAFQVFNN ISPFVKFAHF TSNQAILEAF QRRDRVHIVD  240
LDIMQGLQWP ALFHILATRM EGPPHVRMTG MGTSMELLME TGKQLSNFAK RLGMLFEFHP  300
VAKKFGDITD LSMLQIRRGD ALAIHWLQHS LYDATGTDWK TMRLLQELNP RIITLVEQDI  360
SHGGSFLDRF VGSLHYYSAI FDSLGAFLPN DDNSRHRVEH SLIHREINNV LAVGGPGRSG  420
EDKFKVWRHE LGRNGFLQVP MSSNSLAQAQ LILNMFPPTH GYSLVQVDGT LRLGWKETAL  480
YTASAWTCHV SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-143GRAS family protein