PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002219.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

WRKY

Protein Properties

Length: 380aa MW: 41722.8 Da PI: 6.1267

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002219.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.6	2.9e-29	82	138	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dg+nWrKYGqK vkg f+rsYY+Ct+a+C+++k+vers+ d++++ei Y ++H+h+k Cse_sc002219.1_g050.1 82 DGFNWRKYGQKLVKGDAFSRSYYKCTYANCSARKQVERSH-DGHITEINYLSKHEHPK 138 9*************************************.*************85 PP
2	WRKY	105.5	2.8e-33	236	293	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYYrCt gCpv+k+ver+++d++vv++tYeg+H+he Cse_sc002219.1_g050.1 236 HDGYRWRKYGQKQVKGNPNPRSYYRCTNDGCPVRKQVERASDDERVVVTTYEGSHDHE 293 7********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MKDRDFNQTS PSTQERNFPP VMTNESDAGV SSSQSDVENY SVASRLEQGL GKLPLRRKLD 60 SGVHTPTGQG VTSSWVPETP GDGFNWRKYG QKLVKGDAFS RSYYKCTYAN CSARKQVERS 120 HDGHITEINY LSKHEHPKPP QNQERGPNEP SLTYEAASSG PEASETCVPS SVPPSQSIME 180 VAVSKSNEIE SEVISRPPDA KRQKKESAGV KDSAVTKTNY KPRVVVTTTS PVDIVHDGYR 240 WRKYGQKQVK GNPNPRSYYR CTNDGCPVRK QVERASDDER VVVTTYEGSH DHEMPSGIRT 300 LALNVQGNNN GAASPNDGEP RPQPEAVEAT VQAVRVYPPD EAIVNPTVEV VVNPDGAGGS 360 GVYDPTEEQF SSVKEDANVW

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MKDRDFNQTS PSTQERNFPP VMTNESDAGV SSSQSDVENY SVASRLEQGL GKLPLRRKLD  60
SGVHTPTGQG VTSSWVPETP GDGFNWRKYG QKLVKGDAFS RSYYKCTYAN CSARKQVERS  120
HDGHITEINY LSKHEHPKPP QNQERGPNEP SLTYEAASSG PEASETCVPS SVPPSQSIME  180
VAVSKSNEIE SEVISRPPDA KRQKKESAGV KDSAVTKTNY KPRVVVTTTS PVDIVHDGYR  240
WRKYGQKQVK GNPNPRSYYR CTNDGCPVRK QVERASDDER VVVTTYEGSH DHEMPSGIRT  300
LALNVQGNNN GAASPNDGEP RPQPEAVEAT VQAVRVYPPD EAIVNPTVEV VVNPDGAGGS  360
GVYDPTEEQF SSVKEDANVW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	2e-63	WRKY family protein