PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002169.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 810aa    MW: 89829.8 Da    PI: 6.5623
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002169.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22161262199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++a+e+      + k++ +++l  +d++g++W++k+i+r++++r++l++GW+ Fv++++L +gD ++F
  Cse_sc002169.1_g030.1 161 FCKTLTASDTSTHGGFSVLRRHADEClpaldmS-KQPPTQDLGAKDLHGNRWTFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 247
                            99*****************************63.4444569*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++ l+v+v+r+
  Cse_sc002169.1_g030.1 248 L--RGENGDLRVGVRRA 262
                            *..3488889****996 PP
2Auxin_resp1193.8e-39287368182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            a+ha++t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++++dp +Wp+SkWr+L
  Cse_sc002169.1_g030.1 287 AWHAVQTGTIFTVYYKPRTSPAEFIVPFDQYMESMKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPQNWPESKWRCL 368
                            89*******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    
MASSEVSSMR GGGGGDRDGL GLSGFGDRND GRGGSDSRPV PAVSAAARAD ADAALYKELW  60
RACAGPLVTV PQENELVFYF PQGHIEQVEA STNQVAEQQM PIYNLPSKIL CRVMNVHLRA  120
EQDTDEVFAQ ITLMPEANQD ENAVKKEPAP PAQPRFHVHS FCKTLTASDT STHGGFSVLR  180
RHADECLPAL DMSKQPPTQD LGAKDLHGNR WTFKHIFRGQ PRRHLLQSGW SVFVSSKRLV  240
AGDAFIFLRG ENGDLRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VQTGTIFTVY  300
YKPRTSPAEF IVPFDQYMES MKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEESDPQNW  360
PESKWRCLRV RWDEQSAIPR PERVSPWKIE PALIPPAVNP LPVQKQKRPR SSMLTSSPDS  420
SVLTREGSSR PVAADLSPSS AFSRVLQGQE LSTPRVPFAE NNESDSNGRK TQWPTLVIED  480
DKIDPVSAPM SQRYGMDKMS PLGRGSEASF TDLLSGFGPR NSQTEGKFSI QSNPWSTMPS  540
NLSLKYVPHT KNPFGEYPAQ MNQRSNEQQH GKWLMPPPLS FNLHMNSHSS EVIPKSPLVQ  600
QNDIRKQEDG NCKIFGVTLA GNKVASDSAG NAHQGIQLQN FPAYESDQRS ELSMGMKGMG  660
NLLAGKEQEK QYQDSQPQAK VQGVSTRSCT KVHKQGTALG RSVDLVKFNN YDELIDELDT  720
LFEFNGELKA RTKTWLVVYT DDEGDMMLVG DDPWQEFVVM VRKIYIYTKE EVQRMNLGAL  780
NSRGEDNSSV AEGVDGGDTV AIPSSSPEHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein