PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002128.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 831aa    MW: 93260.9 Da    PI: 6.1803
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002128.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23157258199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
  Cse_sc002128.1_g060.1 157 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 243
                            99*****************************86666675.9*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+++++r+
  Cse_sc002128.1_g060.1 244 I--WNEKNQLLLGIRRA 258
                            *..8899999****997 PP
2Auxin_resp115.25.7e-38283366183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha +t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  Cse_sc002128.1_g060.1 283 AAHASATNSCFTIFFNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPARWPNSHWRSVK 366
                            799********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    
MKLSTSGSGQ QLQEGEKKCL NSELWHACAG PLVSLPTLGS RVIYFPQGHS EQVAATTNKE  60
IDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTEVQSLVK VTMWIYIVIR  120
RIDFKCYLCV TCCQQEQKDT FLPVELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE  180
KVFPPLDFSQ QPPCQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  240
VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHASATN SCFTIFFNPR  300
ASPSEFVIPL SKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPARWPNS  360
HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWYPG ASSFQDSRDD  420
AINGMSWLRG DTGEQALNSL NFQSGGMFPW MQQRVDPSFL QSNLSQQYQA ALAAGLQTGS  480
GDALKQQMLQ FQQPVQYLQQ SGISIPHHSI QQPFVHGQTQ TQMLDPRSLQ QQVNNQEGQQ  540
QQQSSYPDTY QMQNEQFQSR QQSNVPAPLF PKTDYMESSP KFTSNIAPSM QNMLGSLCSE  600
GTSNLSNFSR TSQLVTPENQ SNRQSWVSKF SQPQVTASST SPSVEQQESS SLDAQNHSLY  660
GGLNIDSSGL LLPTLDADLS TMPSAYVGYM QDSSELLQST GQIDQPNHNP NRTFVKVYKS  720
GCVGRSLDMA RFNSYHELRE ELGQMFGIEG LLEDPQRSGW QLVFVDREND VLLLGDDPWE  780
AFVNSVWYIK ILSPEDVQQL GKQEVESFGQ NSGERIHSVS GLPPSMGSLD F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein