PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002049.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

NF-X1

Protein Properties

Length: 858aa MW: 96493.4 Da PI: 8.3817

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002049.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.9	3.4e-06	178	196	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG HkC lCH+GpCp+Cp+ Cse_sc002049.1_g060.1 178 CG-HKCLLLCHPGPCPSCPK 196 .*************96 PP
2	zf-NF-X1	17.6	8.1e-06	283	302	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkH+C+k CHeG+C++Cp+ Cse_sc002049.1_g060.1 283 CGKHSCSKGCHEGECGKCPL 302 ******************95 PP
3	zf-NF-X1	16.4	1.9e-05	337	356	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+H+C + CH+G C + C+ Cse_sc002049.1_g060.1 337 CGIHRCPERCHRGSCVEtCR 356 ***************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MKSTVNHHRP PPQPPSDSDS SDSDTTTTST KKPDFSNTIF QAYTHLSNHD SPDLTKIQSF 60 LTSSRAGALS CLICLERIRP TDPTWQCSTR CHALFHLICI QSWARQSSDL SSARALTRGA 120 EDSTATWNCP KCRIEFPKNL VPKKYLCFCG KVEDPVHDPW VLPHSCGEMC LRDLKYDCGH 180 KCLLLCHPGP CPSCPKLVKV RCFCGGVEDV KRCGFKEFSC SKTCSRLLDC KVHCCGEVCH 240 EGECPPCRAK GVYTCQCGKV KEERDCCERV FRCEIECGEM LGCGKHSCSK GCHEGECGKC 300 PLQGRRTCPC GKRVYEGMAC DVVAPSCGGT CDKKLECGIH RCPERCHRGS CVETCRIVVW 360 KSCKCGSLKK QVPCYQDVVC ERKCQRVRDC GRHACKRKCC DTDCPPCSEI CDKKLRCNNH 420 KCPSPCHRGA CAPCPVMVTI SCFCGETRFE VPCGTEKEQK PPKCSKRCQI PPLCRHKSIT 480 RPHKCHYGAC PQCRLACDEE YPCGHKCKLR CHGPIPPPNP EFTLKPKKKK HHHHQSESTP 540 GSPCPPCPEL VWRPCVGEHI GADRMTVCSN KAKFSCDNYC GNLLPCGNHF CTKTCHALKI 600 SGSGEQCEKC SLPCQREREP LCQHPCPLKC HPEECPPCKV LIKRSCHCGA MVHVFECLYY 660 NTLSAKEQIA VRSCSGPCHK KLPNCTHLCP EICHVGQCPS PEKCSKKVIV RCGCQTLKKD 720 WPCHQVQAAY HSSGRDPKDV TKNQFGLGLL ECNSDCKSKI KVDDSELHQR KPKAPEKKEP 780 DVENYVRKRK RRKDKVQEDH QVSSFQKLMG ILRMILLFVI IVVSLIAMAY FGYKGLMWLN 840 DWMNQVETQR QRKRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MKSTVNHHRP PPQPPSDSDS SDSDTTTTST KKPDFSNTIF QAYTHLSNHD SPDLTKIQSF  60
LTSSRAGALS CLICLERIRP TDPTWQCSTR CHALFHLICI QSWARQSSDL SSARALTRGA  120
EDSTATWNCP KCRIEFPKNL VPKKYLCFCG KVEDPVHDPW VLPHSCGEMC LRDLKYDCGH  180
KCLLLCHPGP CPSCPKLVKV RCFCGGVEDV KRCGFKEFSC SKTCSRLLDC KVHCCGEVCH  240
EGECPPCRAK GVYTCQCGKV KEERDCCERV FRCEIECGEM LGCGKHSCSK GCHEGECGKC  300
PLQGRRTCPC GKRVYEGMAC DVVAPSCGGT CDKKLECGIH RCPERCHRGS CVETCRIVVW  360
KSCKCGSLKK QVPCYQDVVC ERKCQRVRDC GRHACKRKCC DTDCPPCSEI CDKKLRCNNH  420
KCPSPCHRGA CAPCPVMVTI SCFCGETRFE VPCGTEKEQK PPKCSKRCQI PPLCRHKSIT  480
RPHKCHYGAC PQCRLACDEE YPCGHKCKLR CHGPIPPPNP EFTLKPKKKK HHHHQSESTP  540
GSPCPPCPEL VWRPCVGEHI GADRMTVCSN KAKFSCDNYC GNLLPCGNHF CTKTCHALKI  600
SGSGEQCEKC SLPCQREREP LCQHPCPLKC HPEECPPCKV LIKRSCHCGA MVHVFECLYY  660
NTLSAKEQIA VRSCSGPCHK KLPNCTHLCP EICHVGQCPS PEKCSKKVIV RCGCQTLKKD  720
WPCHQVQAAY HSSGRDPKDV TKNQFGLGLL ECNSDCKSKI KVDDSELHQR KPKAPEKKEP  780
DVENYVRKRK RRKDKVQEDH QVSSFQKLMG ILRMILLFVI IVVSLIAMAY FGYKGLMWLN  840
DWMNQVETQR QRKRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	787	792	RKRKRR
2	787	793	RKRKRRK
3	787	794	RKRKRRKD
4	787	795	RKRKRRKDK
5	788	793	KRKRRK
6	789	797	RKRKRRKDK
7	789	794	RKRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein