PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002023.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 489aa MW: 55744.5 Da PI: 9.8048

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002023.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	41.5	2.7e-13	266	311	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 e++isle+++k+ +pi A +L+v+ ++L r CR++GI RWP Rk Cse_sc002023.1_g040.1 266 ESTISLEEIKKHIGKPISVATASLNVSRSTLRRCCRNLGI-RWPNRK 311 789***********************************.9**9 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MRSDSVIGDS LSTILGALKS RYSCLSEPLP PATAGGLDND RRYLHPLWVF GSRDDEPHSL 60 PAANPHMIKD KIKAVLSGLR FHEPRVLVQF WSPVTVWKRC SLTTLDQPFG LGAVDKGLYM 120 YRLKSEQRMF VLEEEHKEIL GPPARVYCQK LPEWSFGIHT LPVRQYVQDL AACYNIHGYI 180 ILPVREVLRA LKEENLRSSN TLEEHSFYTH VRDERRQHEL DEIQNEPSFV AAAEGTGQSV 240 VPCLDVGIED FDINPGTTQI NRKNSESTIS LEEIKKHIGK PISVATASLN VSRSTLRRCC 300 RNLGIRWPNR KHNDKSNETI RKRKRTESSV GLRKLNKKHY GRKTTKELQD ILGVVVSRFV 360 KRFLRSRGIL RRPYRNGPDK SDSRRKLGQT EIHTSEEAST MVFGERLGTK NGLATLTEHD 420 KHSSTLVLHQ QEQTEQYNEN TAATNTVKIL TIEATYREEI AKFGFRISDG LVKLEELVAK 480 RFQLNLGSL

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MRSDSVIGDS LSTILGALKS RYSCLSEPLP PATAGGLDND RRYLHPLWVF GSRDDEPHSL  60
PAANPHMIKD KIKAVLSGLR FHEPRVLVQF WSPVTVWKRC SLTTLDQPFG LGAVDKGLYM  120
YRLKSEQRMF VLEEEHKEIL GPPARVYCQK LPEWSFGIHT LPVRQYVQDL AACYNIHGYI  180
ILPVREVLRA LKEENLRSSN TLEEHSFYTH VRDERRQHEL DEIQNEPSFV AAAEGTGQSV  240
VPCLDVGIED FDINPGTTQI NRKNSESTIS LEEIKKHIGK PISVATASLN VSRSTLRRCC  300
RNLGIRWPNR KHNDKSNETI RKRKRTESSV GLRKLNKKHY GRKTTKELQD ILGVVVSRFV  360
KRFLRSRGIL RRPYRNGPDK SDSRRKLGQT EIHTSEEAST MVFGERLGTK NGLATLTEHD  420
KHSSTLVLHQ QEQTEQYNEN TAATNTVKIL TIEATYREEI AKFGFRISDG LVKLEELVAK  480
RFQLNLGSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	346	KRKRTESSVGLRKLNKKHYGRKTTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-18	Nin-like family protein