PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001911.1_g090.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92568.7 Da    PI: 6.2427
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001911.1_g090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-192280357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cse_sc001911.1_g090.1 22 KYVRYTPEQVEALERLYHECPKPSSVRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
                           5679*****************************************************97 PP
2START167.68.3e-531623702205
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++ + ++ 
  Cse_sc001911.1_g090.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPT-RVAEILKDRPSWYRDCRAVDVVNLLPTAn 248
                            789*******************************************************.8888888888****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++l+  Rdf+ +Ry+   ++g++v++++S++++q+ p+    +++vR+e+lpSg+li+p+++g+s +++v+h++
  Cse_sc001911.1_g090.1 249 gGTIELLYMQLYAPTTLATaRDFWLLRYTSATEDGSLVVCERSLTNTQNGPSmpsVQNFVRGEMLPSGYLIRPCEGGGSIIHIVDHMN 336
                            9**************************************************9888899****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                            l++++++++lr+l+ s ++ ++kt++ +l+++++
  Cse_sc001911.1_g090.1 337 LEAWSVPEVLRPLYDSPTILAQKTTMMALRQLRQ 370
                            *****************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMMGMSSCNK DNGKGGIMDN GKYVRYTPEQ VEALERLYHE CPKPSSVRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RRESSRLQGV NRKLSAMNKL LMEENDRLQK QVSHLVYENG  120
YFRQHTNNKT LATKDTSCES VVTSHLTQNP PQDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVSLEPTR VAEILKDRPS WYRDCRAVDV  240
VNLLPTANGG TIELLYMQLY APTTLATARD FWLLRYTSAT EDGSLVVCER SLTNTQNGPS  300
MPSVQNFVRG EMLPSGYLIR PCEGGGSIIH IVDHMNLEAW SVPEVLRPLY DSPTILAQKT  360
TMMALRQLRQ IAQESSQAST PNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSMMETDG  420
VDDVTISVNS SPDKLMGLNL SFANGYTPVS NAVMCAKASM LLQNVPPALL LRFLREHRSE  480
WADNNIDAYS AAAIKLGPCS LQGSRIGNYG GQVILPLAHT IEHEELLEVI KLEGVEQCPE  540
DALMPRDMFL LQLCSGMDEN AVGMCAELIF APIDSSFADD APLLPSGFRI IPLDSNKDTS  600
SPNRTLDLAS ALEIGGSGNK LSSDRNTGSN TTRSVMTIAF EFAFESHMQD SVASMARQYV  660
RSIISSVQRV ASALSPSNMN PNGGLQTQMG TPEGHTLARW ISHSYRCYLG VELLKSGAHG  720
NESVLKSLWH HSDAIMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KILDDHGRKT  780
LCTEFPQIMQ QGFACLQGGL CLSSMGRPVS YERAVAWKVL NEEENAHCIC FMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein