PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001835.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 573aa MW: 62792.8 Da PI: 7.7407

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001835.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.6	3.9e-17	270	319	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P+ ++K +Ka+ L +++eYI+ Lq Cse_sc001835.1_g040.1 270 RSKHSATEQRRRSKINDRFSMLRELIPHG----DQKRDKASFLLEVIEYIQFLQ 319 889***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MEHPQQRLLG TQGRKPTHDF LSLYSPAQQD PSAATTTPSG SYLETHDFLQ PLERVGKNVA 60 KEANKVEESS IGKSLPPAPP TTVEHILPGG IGTYSISHIS VINQSQRMPK PEGVGVVITG 120 AQSSGSDKND ENSNCSSYTG SGFSLWEESA VKKGKTGKEN IAGNRHVIRE GGMKMGGMPW 180 MTSMERPSQS SSAHNHPTAT ISSLSSSRAS SAQKNPSFVD MLKSAKSVQE DEDEEVEEFV 240 IKKEPSTHYK GVLSVKVDTA HHDQKPNTPR SKHSATEQRR RSKINDRFSM LRELIPHGDQ 300 KRDKASFLLE VIEYIQFLQE KVHKFEESCR GWTNEQPAMT PWNNNQRPTE GFIDQPRVQN 360 GVSGSALPYA SKLNENKHSV ALNLPKKDHQ NIDSDLSSLE TMKDIGQHPR LTNLASPFST 420 LLQPNVYSPG CGSTSVAAPP PSTLPSDTAN TPSQLWQSRS CTTDCTVAGD KSKDQDLTIE 480 SGTISISTIY SQGLLSTLTQ ALQSSGVDLS EANISVQIDL GKRANTSRRD SSTPIFKKNE 540 APVIDENLTR SRLASTREEK SDTDLKRFKT SRN

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MEHPQQRLLG TQGRKPTHDF LSLYSPAQQD PSAATTTPSG SYLETHDFLQ PLERVGKNVA  60
KEANKVEESS IGKSLPPAPP TTVEHILPGG IGTYSISHIS VINQSQRMPK PEGVGVVITG  120
AQSSGSDKND ENSNCSSYTG SGFSLWEESA VKKGKTGKEN IAGNRHVIRE GGMKMGGMPW  180
MTSMERPSQS SSAHNHPTAT ISSLSSSRAS SAQKNPSFVD MLKSAKSVQE DEDEEVEEFV  240
IKKEPSTHYK GVLSVKVDTA HHDQKPNTPR SKHSATEQRR RSKINDRFSM LRELIPHGDQ  300
KRDKASFLLE VIEYIQFLQE KVHKFEESCR GWTNEQPAMT PWNNNQRPTE GFIDQPRVQN  360
GVSGSALPYA SKLNENKHSV ALNLPKKDHQ NIDSDLSSLE TMKDIGQHPR LTNLASPFST  420
LLQPNVYSPG CGSTSVAAPP PSTLPSDTAN TPSQLWQSRS CTTDCTVAGD KSKDQDLTIE  480
SGTISISTIY SQGLLSTLTQ ALQSSGVDLS EANISVQIDL GKRANTSRRD SSTPIFKKNE  540
APVIDENLTR SRLASTREEK SDTDLKRFKT SRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	5e-77	bHLH family protein