PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001808.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33897.2 Da PI: 8.6958

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001808.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.3e-19	131	185	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAkklgL rqV vWFqNrRa+ k Cse_sc001808.1_g040.1 131 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKKLGLRPRQVEVWFQNRRARTK 185 677889***********************************************98 PP
2	HD-ZIP_I/II	128.6	2.6e-41	131	220	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr Cse_sc001808.1_g040.1 131 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKKLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKELQELR 218 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +l Cse_sc001808.1_g040.1 219 -AL 220 .55 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MMAEKADLGL SLSLNFPADS KPSFNDFNRM PGINLFRTTP NCSDSYPLSS DRNTSDAFRV 60 ETRSFLKGID VNRIPATVTE PEDEAGVSSP NSTISSISGK RSERDVPVND TEGERASSRG 120 LSDDEDGENC RKKLRLSKDQ SAVLEESFKE HNTLNPKQKL ALAKKLGLRP RQVEVWFQNR 180 RARTKLKQTE VDCEFLKRCC ENLTDENRRL QKELQELRAL KMSPQFYMQM APPTTLTMCP 240 SCERVAVPPA SSGVTKVEHH HNHPHLAVSN PNQPRALPFN LWSAPTTQVV HRQMSALHPR 300 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	188	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	9e-98	HD-ZIP family protein