PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001804.1_g060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18354.8 Da PI: 4.69 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.3 | 2e-27 | 2 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C dCvl+p++ p++q +++ ++ k+FG+s ++++++a+p ++ r ++++sl+yeA r+ +Pv+Ga+g++++ Cse_sc001804.1_g060.1 2 SCNGCRVLRKGCGVDCVLRPCLewiqsPDAQGHATLFLSKFFGRSDLVNFISAVPSNQqRAALFQSLLYEAVGRTVNPVNGAMGLLST 89 6*************************999*************************776659**************************** PP DUF260 83 lqqqleqlkaelall 97 ++++l+++ ++++l+ Cse_sc001804.1_g060.1 90 GNWHLCEVGVQTVLA 104 ******998887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MSCNGCRVLR KGCGVDCVLR PCLEWIQSPD AQGHATLFLS KFFGRSDLVN FISAVPSNQQ 60 RAALFQSLLY EAVGRTVNPV NGAMGLLSTG NWHLCEVGVQ TVLAGGSPAP LGDETWIQEV 120 DESSEVFQDK GAWAMMMIQN QADPSSSNAT RQENVTTSCD EPKLLNLFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-55 | LBD family protein |