PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001700.1_g070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19682.8 Da PI: 9.8151 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.7 | 2e-15 | 31 | 67 | 10 | 46 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 qvtfskRr ++KKA+ LS+L ++e+a+++fs+t k Cse_sc001700.1_g070.1 31 QVTFSKRRSSLFKKASGLSILYGVEIAIVVFSPTKKA 67 9********************************9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MVRCWCGRQA IVRTSWTAIN PGHRFYACPD QVTFSKRRSS LFKKASGLSI LYGVEIAIVV 60 FSPTKKAFPF GHHSVVMITN RYLRENLPSS SNTSLLMEAH LNAQIHELNR QLTYVDSQLD 120 IEKTISYELR KIRKEGQDNH LWEAPTESLG LEELEQLIAK LYIKMKTLTK N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-30 | M-type_MADS family protein |