PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001511.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12688.6 Da    PI: 8.1795
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001511.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+k+ rqv+fskRrng++KKA+EL  LCd++va+ +fs +gkl e+s+
  Cse_sc001511.1_g050.1  9 KRIEDKTSRQVSFSKRRNGLMKKAYELAELCDVDVALFVFSGRGKLCEFST 59
                           79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MGRGKVELKR IEDKTSRQVS FSKRRNGLMK KAYELAELCD VDVALFVFSG RGKLCEFSTD  60
ERYTEFTVNY GYSVSEMDRS VFKITRFSVT IFGDEVMDFM YSIVLLLFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-26MIKC_MADS family protein