PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001365.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

WRKY

Protein Properties

Length: 498aa MW: 55134.5 Da PI: 8.5408

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001365.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105	3.9e-33	212	268	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkk+vers ++ v+ei+Y+g+Hnh+ Cse_sc001365.1_g020.1 212 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKQVERSV-EGLVTEIIYKGQHNHQ 268 8**************************************.*************8 PP
2	WRKY	106.2	1.6e-33	383	441	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+H+h+ Cse_sc001365.1_g020.1 383 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFQGCNVRKHVERAASDPKAVITTYEGKHTHD 441 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MDEKRGLSLS VPSTGTRPSI TLPPRATVEN MFTGSLTTDA SPGPMTLVSN FFSENEPYSD 60 IRSFSQLLSG AMLSPVELHD RRPVESGGGS VDFRFDSNGR PGSLVVSQPS MFTIPPGMSP 120 ASLLDSPGFF PQGSLGMSHQ QALAQITSQA SQVHTQSHSQ LPQNYSFNSN TTTYQRLPPS 180 IPNHNTSKES SNLSNSDNRY QPPSIAVDKP ADDGYNWRKY GQKQVKGSEY PRSYYKCTHP 240 NCPVKKQVER SVEGLVTEII YKGQHNHQPP QSKRGKDSNT GTSSQYEQGF DQTSNFSHSR 300 DGRSMHSLTM KDQESSQATY ENSGSSDGEE VGDDVSRGDE RHGDEPQAKR RNTEIRGSDP 360 VSSHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT FQGCNVRKHV 420 ERAASDPKAV ITTYEGKHTH DVPAAKNSSH NLAATTSLLQ PPNHAPTGVH SLTRRPEYPN 480 RQQPPQAGRL QFKEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MDEKRGLSLS VPSTGTRPSI TLPPRATVEN MFTGSLTTDA SPGPMTLVSN FFSENEPYSD  60
IRSFSQLLSG AMLSPVELHD RRPVESGGGS VDFRFDSNGR PGSLVVSQPS MFTIPPGMSP  120
ASLLDSPGFF PQGSLGMSHQ QALAQITSQA SQVHTQSHSQ LPQNYSFNSN TTTYQRLPPS  180
IPNHNTSKES SNLSNSDNRY QPPSIAVDKP ADDGYNWRKY GQKQVKGSEY PRSYYKCTHP  240
NCPVKKQVER SVEGLVTEII YKGQHNHQPP QSKRGKDSNT GTSSQYEQGF DQTSNFSHSR  300
DGRSMHSLTM KDQESSQATY ENSGSSDGEE VGDDVSRGDE RHGDEPQAKR RNTEIRGSDP  360
VSSHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT FQGCNVRKHV  420
ERAASDPKAV ITTYEGKHTH DVPAAKNSSH NLAATTSLLQ PPNHAPTGVH SLTRRPEYPN  480
RQQPPQAGRL QFKEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-154	WRKY family protein