PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001357.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 1657aa MW: 186917 Da PI: 6.4253

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001357.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.9	6.4e-16	524	569	2	47
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 e++i+led++k++ +++ +AA L+v+ ++LKriCR+ GI+RWP+ Cse_sc001357.1_g030.1 524 ESSITLEDIEKHYGKTMDEAAAILNVSRSTLKRICRNRGIPRWPYK 569 789*****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1657 aa Download sequence
MIKNWQWPGQ NVHEPGIVGP SPKRNLNKLS LSSAKEDKEN GETSGTLPEE EEYINEDRRY 60 MTSLYVFGVR NIYEPSFSSM MVELNTIDPH MIKERITSAL KDLRFRGKGV LVQFWSPVAV 120 RNRWLLTTWD QPFGVGEADE ELYSFRLKSE LHAIVVDVED TEELRPPGRV YSRKLPEWSL 180 DVEGGGNKYG YIDLPIFESS GDSCVGILEI ITSSNYVDYA FEVQEVSKAL KVNALKQNLK 240 SPNVFEDPRF SIADERRKNE LDGILKVLTV VCDSQDLPLA QTWSVSGYAS SVANSGKIDQ 300 SCSSFNRSCI GKVCMSTYGL PFYVRDLSKW DFHEACSERH LDKSQGVVGR SFSSRGTCFC 360 SDVTKLDEDV SPLVPIARMS GLTSCLAIYM KSLELDVEYV IEFFLPTCSA DESNLQKLMI 420 TMKQHIKSAS MQLDIMSTPQ VIGGPPFLNW DLEFPPLPIT LLTEKGEVPH DSEDMEEDNM 480 ENEPSNSVDV GTSQLVPPYL EKEIENFDTN PGTLRKRRKR KRSESSITLE DIEKHYGKTM 540 DEAAAILNVS RSTLKRICRN RGIPRWPYKS HTSNGALTPV SRVSSEPLGI TRDPEKGKHV 600 ISPSRTNLPD ESIVAKRVEN VVIKVTYGNN TIRFPFCILD GLVKLEELIA TRLQLKRESF 660 RLKYRDADGD MILILCDNDI SDAILSTSEP PDSKAVIKLF VQPVTDQHVE TLFTCAYLPF 720 MSNVHFIDKF PNANAQFVPF VASDHSPAVI AIPDILRAKP RPFKFANYLA SHGDFLPIVK 780 EVWSSFIPGY SMFSVVSKLK MLKKPLRKLR LANGNLSEKV RILKAELEKV QANMEKDFHN 840 SSTRAAFVKT VEWTIIKYAL KLKDISIWEM EGEKKDSWIW NVLIDLNDKI RPPVIHKPGD 900 GKSTSLWYDR WGDNEPLCNI IPKIYRNAAR MENNFCVADM IHNGRWQWPN DWNQPFPELL 960 NVAVPILQER VADKVTMIFG RSNPPSDVNT TNFMKQPQPN VAASGKPVSY AGATSNDPMK 1020 RMSNFLRLEC SNKTNGVDLS VPIKVVEEVN TRFEITLYGY FLGKRIAFLV LGESITVEIP 1080 LLDGTCSTIE KIRVEYEWKP PRCDTCKLFG HTLLDCRKSA PPPTQPKQSV NDGFQTVNNK 1140 NKGRNGGQSV PGKGGFTKPS VGPKFRYQPK VPPPEPKKMD NTKKKATEVA STSGTKIATS 1200 NPFAALNMID TDECSIPTDV VDSGSTMEAK EVGSLKTGNV SQKLLVSDSL EANEVGPTSI 1260 VEKIGEFEKL LINGKATLVG DDVNLTKKVD YPGNKNDFPS TSSTKRVNPF SKVREIVDSD 1320 SDEEEVVNTF DESMNIFGDG HDREDDYDDY AYDDYADQVY DISGNLDAYY DTYVKGIVAR 1380 VARQPDVEPS PEFAALRRHT MVARRLPSRH PNDMKNDQTL FSGVLEDGQE VAVKKLSETS 1440 QQGLDEFSNE VICIAKLQHR NLVKLLGYCI HRNELTLIYD YLTTDETRSL MLDWPKRFHI 1500 IHGMARGILY LHQDSRFQVI HRDLKVGNIL LDSDMNPKIS DFGLARKFVG HDADAKTKKV 1560 VGTYGYISPE YAVHGRFSIK SDVFSFGVMV LEIVSGKKNR EFSQEDHRDN LLGHAWRLYR 1620 EKKSMEIMSE SLRSSCVVSE VLRSIQVAHK IDQLCCQ

Sequence ? help Back to Top

Protein Sequence Length: 1657 aa Download sequence

MIKNWQWPGQ NVHEPGIVGP SPKRNLNKLS LSSAKEDKEN GETSGTLPEE EEYINEDRRY  60
MTSLYVFGVR NIYEPSFSSM MVELNTIDPH MIKERITSAL KDLRFRGKGV LVQFWSPVAV  120
RNRWLLTTWD QPFGVGEADE ELYSFRLKSE LHAIVVDVED TEELRPPGRV YSRKLPEWSL  180
DVEGGGNKYG YIDLPIFESS GDSCVGILEI ITSSNYVDYA FEVQEVSKAL KVNALKQNLK  240
SPNVFEDPRF SIADERRKNE LDGILKVLTV VCDSQDLPLA QTWSVSGYAS SVANSGKIDQ  300
SCSSFNRSCI GKVCMSTYGL PFYVRDLSKW DFHEACSERH LDKSQGVVGR SFSSRGTCFC  360
SDVTKLDEDV SPLVPIARMS GLTSCLAIYM KSLELDVEYV IEFFLPTCSA DESNLQKLMI  420
TMKQHIKSAS MQLDIMSTPQ VIGGPPFLNW DLEFPPLPIT LLTEKGEVPH DSEDMEEDNM  480
ENEPSNSVDV GTSQLVPPYL EKEIENFDTN PGTLRKRRKR KRSESSITLE DIEKHYGKTM  540
DEAAAILNVS RSTLKRICRN RGIPRWPYKS HTSNGALTPV SRVSSEPLGI TRDPEKGKHV  600
ISPSRTNLPD ESIVAKRVEN VVIKVTYGNN TIRFPFCILD GLVKLEELIA TRLQLKRESF  660
RLKYRDADGD MILILCDNDI SDAILSTSEP PDSKAVIKLF VQPVTDQHVE TLFTCAYLPF  720
MSNVHFIDKF PNANAQFVPF VASDHSPAVI AIPDILRAKP RPFKFANYLA SHGDFLPIVK  780
EVWSSFIPGY SMFSVVSKLK MLKKPLRKLR LANGNLSEKV RILKAELEKV QANMEKDFHN  840
SSTRAAFVKT VEWTIIKYAL KLKDISIWEM EGEKKDSWIW NVLIDLNDKI RPPVIHKPGD  900
GKSTSLWYDR WGDNEPLCNI IPKIYRNAAR MENNFCVADM IHNGRWQWPN DWNQPFPELL  960
NVAVPILQER VADKVTMIFG RSNPPSDVNT TNFMKQPQPN VAASGKPVSY AGATSNDPMK  1020
RMSNFLRLEC SNKTNGVDLS VPIKVVEEVN TRFEITLYGY FLGKRIAFLV LGESITVEIP  1080
LLDGTCSTIE KIRVEYEWKP PRCDTCKLFG HTLLDCRKSA PPPTQPKQSV NDGFQTVNNK  1140
NKGRNGGQSV PGKGGFTKPS VGPKFRYQPK VPPPEPKKMD NTKKKATEVA STSGTKIATS  1200
NPFAALNMID TDECSIPTDV VDSGSTMEAK EVGSLKTGNV SQKLLVSDSL EANEVGPTSI  1260
VEKIGEFEKL LINGKATLVG DDVNLTKKVD YPGNKNDFPS TSSTKRVNPF SKVREIVDSD  1320
SDEEEVVNTF DESMNIFGDG HDREDDYDDY AYDDYADQVY DISGNLDAYY DTYVKGIVAR  1380
VARQPDVEPS PEFAALRRHT MVARRLPSRH PNDMKNDQTL FSGVLEDGQE VAVKKLSETS  1440
QQGLDEFSNE VICIAKLQHR NLVKLLGYCI HRNELTLIYD YLTTDETRSL MLDWPKRFHI  1500
IHGMARGILY LHQDSRFQVI HRDLKVGNIL LDSDMNPKIS DFGLARKFVG HDADAKTKKV  1560
VGTYGYISPE YAVHGRFSIK SDVFSFGVMV LEIVSGKKNR EFSQEDHRDN LLGHAWRLYR  1620
EKKSMEIMSE SLRSSCVVSE VLRSIQVAHK IDQLCCQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	521	RKRRKRK
2	516	522	RKRRKRK
3	517	522	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-82	Nin-like family protein