PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001340.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20555.1 Da PI: 5.2572 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.1e-17 | 21 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++G+r +++g+Wv+eIr+p++ +kr++lg++ t+e+Aa+a++ a+++l+g Cse_sc001340.1_g040.1 21 PCFHGIR--SRSGKWVSEIREPRK---SKRIWLGTYPTPEMAAAAYDVAALSLKG 70 5788995..678*********843...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MTSSSASSRT GRTPHMTGRH PCFHGIRSRS GKWVSEIREP RKSKRIWLGT YPTPEMAAAA 60 YDVAALSLKG RDTVLNFPHF VERYQVPALP EPDLIRSAAG AAATLMKCSV DEKVVCQAPG 120 DFSVVADHVI NNYEFMDEEA IFDTPNLYAD MAEGMLMSPP RQLLSTYDHS ALEDSYDFDD 180 LWSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-44 | ERF family protein |