PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001167.1_g070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 18103.8 Da PI: 8.2875 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.2 | 1.8e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+++r+C+++Cv+apyf a++pkkfa vhk+FGasnv+k+l+++pe +r+da++slv+eAe r++dPvyG++g i +lq ++ Cse_sc001167.1_g070.1 11 SCAACKFMKRRCTPHCVFAPYFRADEPKKFAKVHKVFGASNVTKILNEVPEPQRQDAVNSLVFEAEERLKDPVYGCIGAIASLQDKMF 98 6*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ql+++la++k++ Cse_sc001167.1_g070.1 99 QLQHDLAVAKAR 110 *******99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MRTQEPRSTS SCAACKFMKR RCTPHCVFAP YFRADEPKKF AKVHKVFGAS NVTKILNEVP 60 EPQRQDAVNS LVFEAEERLK DPVYGCIGAI ASLQDKMFQL QHDLAVAKAR LARCSSRTSY 120 ASCSTTSPLL MLDGEFGITS FDDFVMDQGG LTTTEFRPHP FP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-62 | LBD family protein |