PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001164.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | SRS | ||||||||
Protein Properties | Length: 397aa MW: 43334.4 Da PI: 7.6734 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221.7 | 1.5e-68 | 153 | 324 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....................aea 70 g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++ + ++ Cse_sc001164.1_g040.1 153 GGGMNCQDCGNQAKKDCQHMRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQQQLATLTNQHQQPSlgnqqlslmmsrgggasgsgIDQ 240 5789****************************************************99888777688999*********999777667 PP DUF702 71 askrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++kr re+++ +++ +l+++++++ le+ ++P+evss+avfrcvrv+++d++ee+laYqtavsigGhvfkGiLyd+G+e+ Cse_sc001164.1_g040.1 241 NPKRLREDHQLIATTGGGLNLPHHHNTSGLEVGHFPAEVSSPAVFRCVRVTAIDEEEEQLAYQTAVSIGGHVFKGILYDRGPES 324 77788888788888888999**************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence |
MSGFFSLGGG NYNITKDDTQ QQHQQRNDQN HHQETHEDSI ITPNSLYLFK NNEDIYNKGF 60 DLWQQYYQLH QQRHQQQHYD LGVARRKHTN TISDGVEDLC LNSNNNNTSH NNNLYSSWNF 120 VSRSSGSSDS SRVMRAAGYG IVGGDGGGGS SSGGGMNCQD CGNQAKKDCQ HMRCRTCCKS 180 RGFQCHTHVK STWVPAAKRR ERQQQLATLT NQHQQPSLGN QQLSLMMSRG GGASGSGIDQ 240 NPKRLREDHQ LIATTGGGLN LPHHHNTSGL EVGHFPAEVS SPAVFRCVRV TAIDEEEEQL 300 AYQTAVSIGG HVFKGILYDR GPESRYNHPG GGDSSSGGGG TGSQHQQLNL ITSGTMGVAT 360 ATTTVNPNVT SIDPSSIYPT PLNAFMAGTQ FFPPPRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-73 | SRS family protein |