PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001088.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 780aa MW: 87370.1 Da PI: 6.5764

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001088.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.3	2.7e-27	529	578	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+isl +l+++Fs+++kdAAk++gvc+T+LK+iCR +GI+RWP+Rkik++ Cse_sc001088.1_g010.1 529 KNISLPVLQQHFSGSLKDAAKSIGVCPTTLKKICRGHGIMRWPSRKIKKV 578 89**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MKKEFFMDDQ LASFTPKASA MFDSIKESGL IANDDTSYSL SFSNLDSSSS YLNSYPNLSQ 60 RYFDDKTDVK PFGASHVDYP LTNTFFDNQT HEKKLTQAIQ YLKAFTRDVD VLIQPWLPVR 120 KERGECVLTT EDQPFILNSN NKGLLGYRDI SKSQNFATED NSEAFFGLPS LVFLKKFPMC 180 TSGGKEDANN DQQLNLCGFL DLPVFEVGSG TCLGVIEIVT ISQNVNYRHE LNNIRKALEA 240 FDLRVSEFLI HPKPEMCGFV YQDYNGSYEL VLAEIREVLR SVCDTHGLPL AQTWSLCAQQ 300 GRGGCQQQSA ACISVMSCAS YVFDPNVLGF FELCSELHLL QGEGIVGQAL GTNQPCFATD 360 ITRFSTTEYP LSDYAKLFRL SGAVAIRLRS TYTGPTDFIL EFFLPRDCRN NDEQKQMLSS 420 ISYVIQNVSK SLHVINGDGL VEEYSFSVKE TGESSWISYM MEAQQMGESF AIPMASPKEE 480 PQELKYQDYQ RSTLSGPEKN IQPDMKRKGK KQSLGIRKSD EKKRSRAPKN ISLPVLQQHF 540 SGSLKDAAKS IGVCPTTLKK ICRGHGIMRW PSRKIKKVGH SLGKLQLIID SVQGAKGTIQ 600 LASFLANFSE LSSTLKPTND SANLFTSQKT TYDSSSCGSR SSGSSTLCCS KVNTLYAQKP 660 SGLLNTPAQG EGKSLVLEKE DVFRVKVIYG EKKIRIRMSR NWDFGELQRE IMVRFNIDDM 720 KSITLKYLDD DSEWILLTCD GDLEECMDIN SPSKKCTIQL FLNLSIHLES RFSYTGNGSS

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MKKEFFMDDQ LASFTPKASA MFDSIKESGL IANDDTSYSL SFSNLDSSSS YLNSYPNLSQ  60
RYFDDKTDVK PFGASHVDYP LTNTFFDNQT HEKKLTQAIQ YLKAFTRDVD VLIQPWLPVR  120
KERGECVLTT EDQPFILNSN NKGLLGYRDI SKSQNFATED NSEAFFGLPS LVFLKKFPMC  180
TSGGKEDANN DQQLNLCGFL DLPVFEVGSG TCLGVIEIVT ISQNVNYRHE LNNIRKALEA  240
FDLRVSEFLI HPKPEMCGFV YQDYNGSYEL VLAEIREVLR SVCDTHGLPL AQTWSLCAQQ  300
GRGGCQQQSA ACISVMSCAS YVFDPNVLGF FELCSELHLL QGEGIVGQAL GTNQPCFATD  360
ITRFSTTEYP LSDYAKLFRL SGAVAIRLRS TYTGPTDFIL EFFLPRDCRN NDEQKQMLSS  420
ISYVIQNVSK SLHVINGDGL VEEYSFSVKE TGESSWISYM MEAQQMGESF AIPMASPKEE  480
PQELKYQDYQ RSTLSGPEKN IQPDMKRKGK KQSLGIRKSD EKKRSRAPKN ISLPVLQQHF  540
SGSLKDAAKS IGVCPTTLKK ICRGHGIMRW PSRKIKKVGH SLGKLQLIID SVQGAKGTIQ  600
LASFLANFSE LSSTLKPTND SANLFTSQKT TYDSSSCGSR SSGSSTLCCS KVNTLYAQKP  660
SGLLNTPAQG EGKSLVLEKE DVFRVKVIYG EKKIRIRMSR NWDFGELQRE IMVRFNIDDM  720
KSITLKYLDD DSEWILLTCD GDLEECMDIN SPSKKCTIQL FLNLSIHLES RFSYTGNGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-141	Nin-like family protein