PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001005.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 547aa MW: 62510.7 Da PI: 5.9918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001005.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	195	246	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ Cse_sc001005.1_g010.1 195 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 246 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MDKDENNYSG GFLGVDFSGE HVQDHEHQNQ QQFMVKNTYE NGNQMVDYLL NNPIQNLPSS 60 GFCSSNSFDK LSFADVMQFA DLGPKLALNQ NKTCNEHEED QETGIDPIYF LKFPVLNERS 120 QEDHESLMAP LGDEENEHRL VIEGGERDEE ARVSEGNSVR LQFMGEDVHK TLGTEGKNKR 180 KRPRTIKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE 240 FVRELEQLLQ CLESQKRRRL YGDAPRVAGD SSSLPVVQQG PPAVFYPPPD EQMKLVEYDG 300 GLKEEMAESK SCLADVEVRL LGFDAMIKIL CRRRPGQLIK IIAALEDLQF TILHTNITTI 360 EQTVLYSFNV KVSSEARFSA EDIANSVQQI IGFVHANTNM LRFHDGHNDP NSVMLECPLC 420 RTQPDSHDHL FFDCVFSFQV WFSLKSFAGF QDIPDSLDDV TRYLIPLSKS RSVKSVVSKL 480 LFAASSYFIW QERNNRIFKH QRRSEVQVID IIKSSVRLKL LTCKFKKSSN TRDLLQIWQL 540 PLSLLPS

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MDKDENNYSG GFLGVDFSGE HVQDHEHQNQ QQFMVKNTYE NGNQMVDYLL NNPIQNLPSS  60
GFCSSNSFDK LSFADVMQFA DLGPKLALNQ NKTCNEHEED QETGIDPIYF LKFPVLNERS  120
QEDHESLMAP LGDEENEHRL VIEGGERDEE ARVSEGNSVR LQFMGEDVHK TLGTEGKNKR  180
KRPRTIKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE  240
FVRELEQLLQ CLESQKRRRL YGDAPRVAGD SSSLPVVQQG PPAVFYPPPD EQMKLVEYDG  300
GLKEEMAESK SCLADVEVRL LGFDAMIKIL CRRRPGQLIK IIAALEDLQF TILHTNITTI  360
EQTVLYSFNV KVSSEARFSA EDIANSVQQI IGFVHANTNM LRFHDGHNDP NSVMLECPLC  420
RTQPDSHDHL FFDCVFSFQV WFSLKSFAGF QDIPDSLDDV TRYLIPLSKS RSVKSVVSKL  480
LFAASSYFIW QERNNRIFKH QRRSEVQVID IIKSSVRLKL LTCKFKKSSN TRDLLQIWQL  540
PLSLLPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	207	RMTHIAVERNRR
2	256	260	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-128	bHLH family protein