PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000968.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GRF

Protein Properties

Length: 472aa MW: 51080.8 Da PI: 9.3033

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000968.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.3e-24	176	220	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cse_sc000968.1_g060.1 176 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 220 79****************************************985 PP
2	QLQ	58.1	2.7e-20	106	142	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ n+P+P++Ll +i+k Cse_sc000968.1_g060.1 106 GPFTPSQWMELEHQALIYKYITVNAPIPSNLLIPIRK 142 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MDFGGLDSLM VCSQTTNTNT STSNNNTNIN SLITGYGSGS NIFKQERSLS TTAHNQDEWR 60 DMKVAKLSNS LYSDSQNMLS FSSPYTQQTR NTTGYGMRGV IAGVRGPFTP SQWMELEHQA 120 LIYKYITVNA PIPSNLLIPI RKALETVAYT SYPGTNLRQA AYGWGGFHLG FSNNSDPEPG 180 RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG QTGHSVSNGP TNTNITATAA 240 AKVSASAAAL ANTTTSSTIL SRLPINPSAY SHSNTMLSPS MGLKPNPLPA PSEFGLVCSD 300 SLLNPLSKTD NLTQKPQNSL RQFIDDWPHS DRTQLSISIP VAPSDFMSST SSPISDKRNL 360 SPLRMGLGVN NTNNNNVSND RSQQVNWIPV SWETSMGGPL GEALNPSTNT SPSALNLMTD 420 SWESSQQMTL SPTGVLQKNG FGSVSNSSAG SSPRTDNCLL GSTFIASSMP LL

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MDFGGLDSLM VCSQTTNTNT STSNNNTNIN SLITGYGSGS NIFKQERSLS TTAHNQDEWR  60
DMKVAKLSNS LYSDSQNMLS FSSPYTQQTR NTTGYGMRGV IAGVRGPFTP SQWMELEHQA  120
LIYKYITVNA PIPSNLLIPI RKALETVAYT SYPGTNLRQA AYGWGGFHLG FSNNSDPEPG  180
RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG QTGHSVSNGP TNTNITATAA  240
AKVSASAAAL ANTTTSSTIL SRLPINPSAY SHSNTMLSPS MGLKPNPLPA PSEFGLVCSD  300
SLLNPLSKTD NLTQKPQNSL RQFIDDWPHS DRTQLSISIP VAPSDFMSST SSPISDKRNL  360
SPLRMGLGVN NTNNNNVSND RSQQVNWIPV SWETSMGGPL GEALNPSTNT SPSALNLMTD  420
SWESSQQMTL SPTGVLQKNG FGSVSNSSAG SSPRTDNCLL GSTFIASSMP LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-74	GRF family protein