PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000869.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27215.9 Da PI: 5.0612 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.7e-23 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k + qvtfskRr+g++KKA LSvLCd+++av++fs +gklye Cse_sc000869.1_g040.1 9 KLIEDKNKCQVTFSKRRTGLMKKARHLSVLCDVDIAVLVFSANGKLYES 57 569********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRRKLEMKL IEDKNKCQVT FSKRRTGLMK KARHLSVLCD VDIAVLVFSA NGKLYESCSG 60 SSSNSVEHIL SRYERSITEA GERTNNGAGG QLEVLSQCTK FRTCKELLQT VDRLVEENNS 120 EELSVTDMTE LELELDAALV QTRLRKMLDG GGMLHISPGP KVWILASWGY LSGTEMEILT 180 QLMMEYMSAL QEEEKKLTED KGELENQVAS AKQLQNDDGG GGLNNLATNQ TNSPQHLVTL 240 PLFNG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 7e-29 | MIKC_MADS family protein |