PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000822.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 795aa MW: 89291.2 Da PI: 7.0293

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000822.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	27.3	6.9e-09	525	572	4	46
RWP-RK 4 eisledlskyFslpikdAAkeLg.....vclTvLKriCRqyGIkRWPh 46 +++le +++++ +p+ +AA++L + +++Kr CR +GI+ WP Cse_sc000822.1_g010.1 525 SLTLEAVAQQYGKPLDEAAQNLRgksftFSRSTIKRFCRDNGIMSWPK 572 799*****************999999*****************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MDLMESADGC NLPGSVSAID RVLDLLGNSK ISYEQPTVQS SGDLAYVTQL WVFSSSQSTA 60 TGFYPRAENF VPNPPLETKD KIRVVLKLLS FREKHIIVQY WSPRALGRHR LLTTLDQPFG 120 LGVLDEGLCL FRKESEKCLL IVDKDHEEDD CSPPARVFRR GLPEWTPNVT SYLSKDFPQQ 180 NHAINCNLRG YLAFPVFDSN TKSCVGVLEL LMSSNSTNYA FAVQQVHTAL KTQNLTTPLA 240 FDFPTSLILS EHRQNLDKIC SILKNVCDIY NLPLAQTWAV SSSSTFVSHD QIIDKSCSSF 300 NTKCIGKVCM FTAGLPFDVR DSCKWKFREQ CREQHLEKSR GVVGRALSSQ GLCFCGDVTK 360 FSEEEYPLVH YACIYKLSSC FAIFLHSLEG NADYVLEFFL PLNFKDNSHI QNVVQTLKEN 420 IEAASGFKLG DTSSIEIGPS REVSNMSLDT EAVLVQSFLT TEPVVENVAN MDSANILNRC 480 SLESNYPKNI DDILTNTERL AGENVVDAGK NGNEFKRHRK RKIGSLTLEA VAQQYGKPLD 540 EAAQNLRGKS FTFSRSTIKR FCRDNGIMSW PKPSNTTASV TDLKLSQESL LGKPEQTTNI 600 IDPYTQYFID RAFPESFHQS QMLSVTDGSD IGTGTLKKTK NNNVREVLLT LENLLADNED 660 GGAHFRPVPK RVTDLKLLQK SLPEQDLQQR SNVRLGRWWI CGKHRGLVTY ESRFNIYQVA 720 RLIVGLKRWR NKSLIRPRGD SVFCVSTGRP EDATNIVNPS TGVSLEQIFD VDYLLSFQNI 780 GGWHWNGDDK GNFGL

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MDLMESADGC NLPGSVSAID RVLDLLGNSK ISYEQPTVQS SGDLAYVTQL WVFSSSQSTA  60
TGFYPRAENF VPNPPLETKD KIRVVLKLLS FREKHIIVQY WSPRALGRHR LLTTLDQPFG  120
LGVLDEGLCL FRKESEKCLL IVDKDHEEDD CSPPARVFRR GLPEWTPNVT SYLSKDFPQQ  180
NHAINCNLRG YLAFPVFDSN TKSCVGVLEL LMSSNSTNYA FAVQQVHTAL KTQNLTTPLA  240
FDFPTSLILS EHRQNLDKIC SILKNVCDIY NLPLAQTWAV SSSSTFVSHD QIIDKSCSSF  300
NTKCIGKVCM FTAGLPFDVR DSCKWKFREQ CREQHLEKSR GVVGRALSSQ GLCFCGDVTK  360
FSEEEYPLVH YACIYKLSSC FAIFLHSLEG NADYVLEFFL PLNFKDNSHI QNVVQTLKEN  420
IEAASGFKLG DTSSIEIGPS REVSNMSLDT EAVLVQSFLT TEPVVENVAN MDSANILNRC  480
SLESNYPKNI DDILTNTERL AGENVVDAGK NGNEFKRHRK RKIGSLTLEA VAQQYGKPLD  540
EAAQNLRGKS FTFSRSTIKR FCRDNGIMSW PKPSNTTASV TDLKLSQESL LGKPEQTTNI  600
IDPYTQYFID RAFPESFHQS QMLSVTDGSD IGTGTLKKTK NNNVREVLLT LENLLADNED  660
GGAHFRPVPK RVTDLKLLQK SLPEQDLQQR SNVRLGRWWI CGKHRGLVTY ESRFNIYQVA  720
RLIVGLKRWR NKSLIRPRGD SVFCVSTGRP EDATNIVNPS TGVSLEQIFD VDYLLSFQNI  780
GGWHWNGDDK GNFGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-96	Nin-like family protein