PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000812.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 549aa MW: 62654.2 Da PI: 9.611

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000812.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.1	8.1e-12	16	61	3	48
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e +sn qvtfsk g++KK +EL +L ++e+a+++fs+ k + Cse_sc000812.1_g050.1 16 MEKESNLQVTFSKCCFGLFKKDSELNILGEVEIAIVVFSPAKKAFS 61 68899**********************************9987665 PP
2	SRF-TF	52	9.1e-17	214	258	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien+++ +vtf+kRr ++KK +ELS+LC+++ aviifs++ k Cse_sc000812.1_g050.1 214 KKIENERRLSVTFAKRRPSVIKKVNELSTLCGVQSAVIIFSPNEK 258 68***************************************9976 PP
3	SRF-TF	59.2	5.2e-19	387	431	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ri +sn +v fskRr ++KKA+ELS+LC+++va+i+fs+++k Cse_sc000812.1_g050.1 387 ERIAKQSNLSVCFSKRRPNVFKKASELSILCGVDVAIIVFSPNNK 431 68999*************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MARHSKGRQK IKMQKMEKES NLQVTFSKCC FGLFKKDSEL NILGEVEIAI VVFSPAKKAF 60 SFGHPSVEMI TGRYLKEYLP SKSLGLEELE QLKVQLGVIC SNIEEQKERS MAEAANAMAV 120 VPISSSTGID SGYGLSITRH EYGHFANKCP SKKEEESNLI EEDLEPTLLM ATVEEEPEEH 180 DQPGNKEDHR RKRWKSQKKK MVRIYAGRKK IENKKIENER RLSVTFAKRR PSVIKKVNEL 240 STLCGVQSAV IIFSPNEKSV YSFGDPSLDV LVSGYLAQCP GAPSSRTSGW VEQLHNPQTE 300 IFNSQLNSML ARLEYEQTIT ENLKKTKKEN QEKIWYNAPI ENLGIEELTV LKNATLAVKM 360 QADQGIMDTR SKKMPRNFVG RRKVEMERIA KQSNLSVCFS KRRPNVFKKA SELSILCGVD 420 VAIIVFSPNN KRVYSFGAPS VEAVMHHYLG QNHDVTTSST SMRMEELRKA KIEHLNIELT 480 NLVAQLESKK KVGEQLKMTR KENQEKKWWT APIENLGLEE LERLKPIMSM LKDKYPCFTQ 540 LNYPTNLHF

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MARHSKGRQK IKMQKMEKES NLQVTFSKCC FGLFKKDSEL NILGEVEIAI VVFSPAKKAF  60
SFGHPSVEMI TGRYLKEYLP SKSLGLEELE QLKVQLGVIC SNIEEQKERS MAEAANAMAV  120
VPISSSTGID SGYGLSITRH EYGHFANKCP SKKEEESNLI EEDLEPTLLM ATVEEEPEEH  180
DQPGNKEDHR RKRWKSQKKK MVRIYAGRKK IENKKIENER RLSVTFAKRR PSVIKKVNEL  240
STLCGVQSAV IIFSPNEKSV YSFGDPSLDV LVSGYLAQCP GAPSSRTSGW VEQLHNPQTE  300
IFNSQLNSML ARLEYEQTIT ENLKKTKKEN QEKIWYNAPI ENLGIEELTV LKNATLAVKM  360
QADQGIMDTR SKKMPRNFVG RRKVEMERIA KQSNLSVCFS KRRPNVFKKA SELSILCGVD  420
VAIIVFSPNN KRVYSFGAPS VEAVMHHYLG QNHDVTTSST SMRMEELRKA KIEHLNIELT  480
NLVAQLESKK KVGEQLKMTR KENQEKKWWT APIENLGLEE LERLKPIMSM LKDKYPCFTQ  540
LNYPTNLHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-33	M-type_MADS family protein