PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000732.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 458aa MW: 50875.1 Da PI: 5.9336

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000732.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l Cse_sc000732.1_g040.1 31 KGPWTAAEDAILMEYVRKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 78 79******************************************9986 PP
2	Myb_DNA-binding	45.8	1.4e-14	84	127	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ ++++++ ++G++ W++ a +++ gRt++++k++w++ Cse_sc000732.1_g040.1 84 KGAFTHDEERQIIELHSKFGNK-WARMALHLQ-GRTDNEIKNYWNT 127 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MAPEDGATSI SRNIGHGGTC GRTNNGQVLK KGPWTAAEDA ILMEYVRKHG EGNWNAVQRN 60 SGLMRCGKSC RLRWANHLRP NLKKGAFTHD EERQIIELHS KFGNKWARMA LHLQGRTDNE 120 IKNYWNTRLK RRLRAGLPIY PVDFQQHHRR HHDQSLQSQT IPFSSSSSSS NHANAALNSI 180 SSPLLLNHLN YPVLSTPAYL PNSQSQFKLF RDNSGGVVAN SSPSSMLFFN QRYHGVTQIP 240 KMEASFNELP SIQSSFQAIT PTCSSNTVND QIIVPSTDGD NAISPYICPR GNSGLLEDVL 300 GESRALLSSQ ILSNESKSSE SDKGKEKITH DYSLMEEPEN VTLESVFKPN DNNMPLDDSS 360 SGHSSVEIGE KSRSDVIDEM NVTDDDFSSW LDFPTGWYVG NEQDASTEKP VDAPNGNIVG 420 TENQVEILCS PDATTTETDH DHDWTMGSYC WNNMPGFS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MAPEDGATSI SRNIGHGGTC GRTNNGQVLK KGPWTAAEDA ILMEYVRKHG EGNWNAVQRN  60
SGLMRCGKSC RLRWANHLRP NLKKGAFTHD EERQIIELHS KFGNKWARMA LHLQGRTDNE  120
IKNYWNTRLK RRLRAGLPIY PVDFQQHHRR HHDQSLQSQT IPFSSSSSSS NHANAALNSI  180
SSPLLLNHLN YPVLSTPAYL PNSQSQFKLF RDNSGGVVAN SSPSSMLFFN QRYHGVTQIP  240
KMEASFNELP SIQSSFQAIT PTCSSNTVND QIIVPSTDGD NAISPYICPR GNSGLLEDVL  300
GESRALLSSQ ILSNESKSSE SDKGKEKITH DYSLMEEPEN VTLESVFKPN DNNMPLDDSS  360
SGHSSVEIGE KSRSDVIDEM NVTDDDFSSW LDFPTGWYVG NEQDASTEKP VDAPNGNIVG  420
TENQVEILCS PDATTTETDH DHDWTMGSYC WNNMPGFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	RLKRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-66	MYB family protein