PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000600.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 464aa MW: 52532.5 Da PI: 6.6437

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000600.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	72.1	1e-22	149	196	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC+ dl +ak+yhrrh++C hsk+p+v+v+g+e+rfCqqCsr Cse_sc000600.1_g030.1 149 RCQVEGCNLDLVSAKDYHRRHRICANHSKSPKVIVAGMERRFCQQCSR 196 6**********************************************9 PP
2	SBP	47	6.6e-15	228	259	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 srfh+lsefD++krsCrrrL+ hn+rrr++q+ Cse_sc000600.1_g030.1 228 SRFHDLSEFDDRKRSCRRRLSAHNARRRRPQS 259 9****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDWNLNTPTE WDWENLAMYN NKEIEVPKNL QFSSQENVVA DNVDFAFSAS ADSLSKGVVK 60 NFEVFDDLPK EFLEKEESSW VEENGSFSNM VEDTSVISGE AMIGLKLGRH ASTSSCNNKT 120 ATTSEPLFPT ASPMIKRSRA SYLSSQSPRC QVEGCNLDLV SAKDYHRRHR ICANHSKSPK 180 VIVAGMERRF CQQCSRKVTF IKNNTHIGFL IHHLFLTSNK LTLRWVISRF HDLSEFDDRK 240 RSCRRRLSAH NARRRRPQSE EIQFSSSRMS SSISDRRPQM NFLLSRASIP ILDSEPTESS 300 CSFKGEESLL GLTKGRGMDV CSTNGTLNFS SERFMPRNVN HNGMDATSNS IVSADVRNAF 360 SLLSTSSWPS NWHEESSSFD QFENGNNNIS LAQPGIDRAS KSHGKDDTRV TCEGIEDPKC 420 LLMGIQDYLL DSEKVKDEGR AFNIKYFDEN DLDFVADSIR SQRL

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDWNLNTPTE WDWENLAMYN NKEIEVPKNL QFSSQENVVA DNVDFAFSAS ADSLSKGVVK  60
NFEVFDDLPK EFLEKEESSW VEENGSFSNM VEDTSVISGE AMIGLKLGRH ASTSSCNNKT  120
ATTSEPLFPT ASPMIKRSRA SYLSSQSPRC QVEGCNLDLV SAKDYHRRHR ICANHSKSPK  180
VIVAGMERRF CQQCSRKVTF IKNNTHIGFL IHHLFLTSNK LTLRWVISRF HDLSEFDDRK  240
RSCRRRLSAH NARRRRPQSE EIQFSSSRMS SSISDRRPQM NFLLSRASIP ILDSEPTESS  300
CSFKGEESLL GLTKGRGMDV CSTNGTLNFS SERFMPRNVN HNGMDATSNS IVSADVRNAF  360
SLLSTSSWPS NWHEESSSFD QFENGNNNIS LAQPGIDRAS KSHGKDDTRV TCEGIEDPKC  420
LLMGIQDYLL DSEKVKDEGR AFNIKYFDEN DLDFVADSIR SQRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	256	RKRSCRRRLSAHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	3e-28	SBP family protein