PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000535.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 382aa MW: 43416.7 Da PI: 4.6601

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000535.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.1	1.8e-16	148	232	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L+ea ++ + +r++l+ W+ev++++ + ++ers qC+++++ l+k+ykk+k++ ++ + ++ s+++yf++++ Cse_sc000535.1_g050.1 148 WTEHETFVLLEAWGDRFLQCGRKSLRSEEWQEVADRVsQVSKMERSDSQCRNRLDTLKKKYKKEKANING-SRGVNSKWVYFKKMD 232 ***********************************555788******************98886.689999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDGDREDSKY AVNYGMNQGY GSMQVPKGLV RNVPYAQSQM ITKYEDDDEV EDEEEEQEPE 60 EERNVGDNEV NGSTHQIGVD DDDEDDDGDG DGNNGINNSV NMQRHPKKRK LKSLLLSYEL 120 APRVPPVTPA PTSGRKYSYG GRNTLTDWTE HETFVLLEAW GDRFLQCGRK SLRSEEWQEV 180 ADRVSQVSKM ERSDSQCRNR LDTLKKKYKK EKANINGSRG VNSKWVYFKK MDMLLSSSIQ 240 QAGSISRGVD SRENVFRNPS VPLSITNGVD ESRDSAGNSE CQEGDDDSDL LPPKKLKSVS 300 DRNSGSSFKL LADSINKFSK IYERIENSKI QQMIELEKMR MDFQRDLEMQ KRQILDRAQS 360 EISKVRQGNY DDNDVSAENV SG

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDGDREDSKY AVNYGMNQGY GSMQVPKGLV RNVPYAQSQM ITKYEDDDEV EDEEEEQEPE  60
EERNVGDNEV NGSTHQIGVD DDDEDDDGDG DGNNGINNSV NMQRHPKKRK LKSLLLSYEL  120
APRVPPVTPA PTSGRKYSYG GRNTLTDWTE HETFVLLEAW GDRFLQCGRK SLRSEEWQEV  180
ADRVSQVSKM ERSDSQCRNR LDTLKKKYKK EKANINGSRG VNSKWVYFKK MDMLLSSSIQ  240
QAGSISRGVD SRENVFRNPS VPLSITNGVD ESRDSAGNSE CQEGDDDSDL LPPKKLKSVS  300
DRNSGSSFKL LADSINKFSK IYERIENSKI QQMIELEKMR MDFQRDLEMQ KRQILDRAQS  360
EISKVRQGNY DDNDVSAENV SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-63	Trihelix family protein