PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000427.1_g100.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 629aa    MW: 69879.8 Da    PI: 7.8049
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000427.1_g100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-24127228199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++v
  Cse_sc000427.1_g100.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVVAKDVHGKLWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIV 212
                            89****************************986555555..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F +   +++ l+v+++r+
  Cse_sc000427.1_g100.1 213 FLR--ADNGDLCVGIRRA 228
                            **3..478888****996 PP
2Auxin_resp110.61.6e-36265348183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+ + +Fevv++Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v   d+vrWpnS+Wr+L+
  Cse_sc000427.1_g100.1 265 AANLAALGRPFEVVFYPRASTPEFCVKASTVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVDVDDQVRWPNSPWRLLQ 348
                            6889999***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    
MINVMDHHMN KPTLDSQLWH ACAGGMVQMP ELNSKIFYFP QGHAEHAGGA GSGVTGAAGF  60
PRVPPYILCA VSAVNFMADT NTDEVYAKIG LVPLKNSTNE NDYDSTNDGF LGFDRNKNEN  120
QDKPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTVVAK DVHGKLWKFR  180
HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRADNGD LCVGIRRAKR GIGRGFLDSN  240
CSGWNTSVAG VGDSGKVSVN SVVEAANLAA LGRPFEVVFY PRASTPEFCV KASTVKAAMR  300
IQWCPGMRFK MAFETEDSSR ISWFMGTISS VDVDDQVRWP NSPWRLLQVA WDEPDLLQNV  360
KRVSPWLVEL VSNMPAIHLS PFSPPRKKLR VPQPPDFPLF TMPSMIPNHI PNSIQGARHN  420
PQFGFDHHLH QHHQYLSKIQ SFPFGSPRFP PRFIETTQET EKKENVSCWL TIGNKCNSKS  480
SSKDEKKPTF SLFGQPIFTE QQLSDSSSGE TGSVVVQNGP GSSSSDEASP WSKDRRSEFG  540
VETGHCKIFM ESEDVGRTLD LTAFRSYEEL HRKLSDMFSV EKSVMMNNLI YRTSTGAVKH  600
TGDEPFSEFS KTAQRLTIVM DSGSDNVGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein