PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000371.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 813aa    MW: 87618.1 Da    PI: 5.5524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000371.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.8e-21121176156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Cse_sc000371.1_g080.1 121 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 176
                            688999***********************************************999 PP
2START193.69.7e-613285501206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela++a++elvk+a+ +ep+W +      e+ n+ e+ + +++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++  
  Cse_sc000371.1_g080.1 328 ELALAAMDELVKLAQTDEPLWIRTIeggrEIMNQNEYSRAITPCIGlkpneYVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcm 414
                            5899*********************99998888888888888888899**9***************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              + +t +vis+g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  +++   s +  +++lpSg+++++
  Cse_sc000371.1_g080.1 415 iaRTSTSDVISNGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRENA--SAFSGCRRLPSGCVVQD 500
                            *******************************************************************96..6777789********** PP

                            ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwveh++++++ +h+l+r+l++ g+ +ga++wva+lqrqce+
  Cse_sc000371.1_g080.1 501 MPNGYSKVTWVEHAEYDESAVHELYRPLIRAGMGFGAQRWVAALQRQCEC 550
                            ************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    
MSFGGFLDNS HGGDGGGSGG GGGGARVVAD IAYNIRSGGP MSKSMFSSPG LSLALQTTME  60
GGGGGGVGEM GRMPENYETG SGVGGRRSRE DEHESRSGSD NMDGGGSGDD PDGDDGKPPR  120
KKRYHRHTPQ QIQELEALFK ECPHPDEKQR LELSRRLCLE TRQVKFWFQN RRTQMKTQLE  180
RHENSILRQE NDKLRAENMS IREAMRNPIC TNCGGPAMIG DISLEEQHLR IENARLKDEL  240
DRVCALAGKF LGRPVSSMGP PMPNSSLELG VGGTHFGGMI SSTTSAMPLG PQDFGVGISS  300
ASSVVPSSRA SNNVMGIDHS LERSMYLELA LAAMDELVKL AQTDEPLWIR TIEGGREIMN  360
QNEYSRAITP CIGLKPNEYV SEASRETGMV IINSLALVET LMDSNKWAEM FPCMIARTST  420
SDVISNGMGG TRNGALQLMH AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDTIR  480
ENASAFSGCR RLPSGCVVQD MPNGYSKVTW VEHAEYDESA VHELYRPLIR AGMGFGAQRW  540
VAALQRQCEC LAILMSSAVP TRDHTAITAG GRKSMLKLAQ RMTDNFCAGV CASTVYKWNK  600
LHANNVDEDV RVMTRQSVDD PGEPPGIVLS AATSVWLPVS PQRLFEFLRD EQLRSEWDIL  660
SNGGPMQKMA HIAKGQDEGN CVSLLRASAM NTNQSSMLIL QETCIDAAGS LVVYAPVDIP  720
AMHVVMNGGD SAYVALLPSG FAIVPDGQGT RGSETNNGDG GNGGAGGSLL TVAFQILVNS  780
LPTAKLTVES VETVNNLISC TVQKIKAALS SDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein