PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000344.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 431aa MW: 50140.5 Da PI: 9.4959

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000344.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3e-16	59	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++ Fs+rks+sk++ + e+t++ vC++ gk++++ k + +++r+++ t t+Cka+++ + Cse_sc000344.1_g050.1 59 NMYLEYAFKARFSIRKSTSKRK--KSEVTHKYIVCNRAGKPRKTIVKdtlaqssqtvdnqkdgvnKPRQKRNSNYTVTNCKACVTFRA 144 58*************99988..7779**********9988889**********9877888899999******** PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc000344.1_g050.1 145 IHgTSPFKLYEFVENHNHPLL 165 99***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MRVIFLYNVF VEYSDLDDSE SDDECIPTPK GHKYWVPEVP ADEKPSEGNV FDTFDEAYNM 60 YLEYAFKARF SIRKSTSKRK KSEVTHKYIV CNRAGKPRKT IVKDTLAQSS QTVDNQKDGV 120 NKPRQKRNSN YTVTNCKACV TFRAIHGTSP FKLYEFVENH NHPLLDENNT DLLKARRKLD 180 FSDKLFIHRS SLSNLGPTKA HRLRVAFMGS YQKVRGKPSD WKNFRRYRMI FIPFTRIDHN 240 KKCVTFGAAL IGDETIESYK WILTSFKKAH VKEPILVVTD QNPALRSVVE ALFPEAHHRL 300 CMWHITQKLP GKICGEVDSD SEFKKLFHKL IWNVFIEPSE FEERWHALIA AMEKQHYVQR 360 VMDNRTFETT PVMFTDPPIE RHACSVQKEI LKGLYACSQI SVTSEEWVTV SIIQQKNKQN 420 AVVINAKVNY L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MRVIFLYNVF VEYSDLDDSE SDDECIPTPK GHKYWVPEVP ADEKPSEGNV FDTFDEAYNM  60
YLEYAFKARF SIRKSTSKRK KSEVTHKYIV CNRAGKPRKT IVKDTLAQSS QTVDNQKDGV  120
NKPRQKRNSN YTVTNCKACV TFRAIHGTSP FKLYEFVENH NHPLLDENNT DLLKARRKLD  180
FSDKLFIHRS SLSNLGPTKA HRLRVAFMGS YQKVRGKPSD WKNFRRYRMI FIPFTRIDHN  240
KKCVTFGAAL IGDETIESYK WILTSFKKAH VKEPILVVTD QNPALRSVVE ALFPEAHHRL  300
CMWHITQKLP GKICGEVDSD SEFKKLFHKL IWNVFIEPSE FEERWHALIA AMEKQHYVQR  360
VMDNRTFETT PVMFTDPPIE RHACSVQKEI LKGLYACSQI SVTSEEWVTV SIIQQKNKQN  420
AVVINAKVNY L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	103	KRKKSEVTHKYIVCNRAGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-18	FAR1 family protein