PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000217.1_g110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 144aa MW: 16237.5 Da PI: 6.6494 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+ rr+C+ +C++apyfpa++p++fa+vh+++Gasn++k+l++lp + r +a++sl+yeA++r++dPvyG+v++i++l+q+l+ Cse_sc000217.1_g110.1 5 RCAVCKYFRRGCPLECIFAPYFPADNPQRFAYVHRFYGASNISKMLEELPVHLRANAIESLCYEAKCRMQDPVYGCVRIISSLHQELH 92 6*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++++la++++e Cse_sc000217.1_g110.1 93 IAQSQLAKTQAE 104 ********9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence |
MTSTRCAVCK YFRRGCPLEC IFAPYFPADN PQRFAYVHRF YGASNISKML EELPVHLRAN 60 AIESLCYEAK CRMQDPVYGC VRIISSLHQE LHIAQSQLAK TQAEIALLNA SVGVVEPTPS 120 SRESLVQQND IDHGLDNASD IWFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-49 | LBD family protein |