PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000156.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 592aa MW: 65799 Da PI: 6.862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000156.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	429	475	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Cse_sc000156.1_g070.1 429 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 475 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MSIESFNDED KAIVASVLGT KAYDYLISSS VTNESLLTSL ASNDDNLQNK LSDLVENVSL 60 GNFSWNYAIF WQISRSKTGE LVLVWGDGCC REPREGEEFD IARILSIRLE DENQQRVKKR 120 VLQKLHVLFG GLDEDNYAFG LDRVTDTEMF FLISMYFSFP QGQGGPGKCF SSGKHFWYSD 180 TLKSSSDYCF RSNLAKSAGI QTVVLVPTDG GVLEVGSIRS IPENMDLLHS IRSSFSLKPS 240 NGLVAASPLM GNAQLSSALI GERKNENGHG GHFLDLGLVD HQLKASKVVQ QDMGLSLRQP 300 QFREKLAVRK AEEPRSPWEG YPVTNSRLLA SNTRNRITGS NWGQFTSPQE EFQLNSFRPQ 360 KSPTEMQIDF TGAVSRPSVV SRPVSGDSEA SDVEASGRDE RVVLTGLTDD KRPRKRGRKP 420 ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQKKLKE 480 MESERNGSHG STSMETPNNS NNGSSLEKIE IEADKDQVTV RVSCPVDTHP ISKVIQAFKE 540 AQIRVVDSKM AAANDKVFHI FVIKSQGPEQ LTKEKLMAVF SKESSSSLNS LP

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MSIESFNDED KAIVASVLGT KAYDYLISSS VTNESLLTSL ASNDDNLQNK LSDLVENVSL  60
GNFSWNYAIF WQISRSKTGE LVLVWGDGCC REPREGEEFD IARILSIRLE DENQQRVKKR  120
VLQKLHVLFG GLDEDNYAFG LDRVTDTEMF FLISMYFSFP QGQGGPGKCF SSGKHFWYSD  180
TLKSSSDYCF RSNLAKSAGI QTVVLVPTDG GVLEVGSIRS IPENMDLLHS IRSSFSLKPS  240
NGLVAASPLM GNAQLSSALI GERKNENGHG GHFLDLGLVD HQLKASKVVQ QDMGLSLRQP  300
QFREKLAVRK AEEPRSPWEG YPVTNSRLLA SNTRNRITGS NWGQFTSPQE EFQLNSFRPQ  360
KSPTEMQIDF TGAVSRPSVV SRPVSGDSEA SDVEASGRDE RVVLTGLTDD KRPRKRGRKP  420
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQKKLKE  480
MESERNGSHG STSMETPNNS NNGSSLEKIE IEADKDQVTV RVSCPVDTHP ISKVIQAFKE  540
AQIRVVDSKM AAANDKVFHI FVIKSQGPEQ LTKEKLMAVF SKESSSSLNS LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	419	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-168	bHLH family protein