PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000107.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB_related | ||||||||
Protein Properties | Length: 350aa MW: 39048.4 Da PI: 8.449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.3e-07 | 290 | 333 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 g+W+ Ed l++a k ++++ +W++I + ++ gR+ c r Cse_sc000107.1_g030.1 290 GSWSSSEDIALLNALKAFPKEvamRWEKITAAVP-GRSKAACMKR 333 79********************************.*******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MCGAMVMAVY HEEKEARLWR NPNSPDLVSA MEFFDEESRP RILLQSRSTP KSTAQNQSPQ 60 TLETIHKPTL FLSLSLSATL LSLSIFYFNY DPFQSLLIWC SLSFLVGPFA PLNLTAGDIR 120 VGQGPAMEPT SPPRYSQEPD PPKRSRFRAK KIDQDDNFMT PFIPLSKTLE PISSIRANEK 180 DNDSDKNAVF TETEWSDGDL ELLKKQMVKN PVGMPGRWEA VAEVFNGRHK VESVVKMAKS 240 MGDRRMGGGD GDSFSRFLKD RKAVDKRVDE VIENEREENK VVGNGGSGGG SWSSSEDIAL 300 LNALKAFPKE VAMRWEKITA AVPGRSKAAC MKRVADLKKD FRSSKTSSEA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 2e-58 | MYB_related family protein |