PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62044718-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 442aa    MW: 47307.9 Da    PI: 8.6013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62044718-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-0893113526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f + G Ck G+ C FaHg
  AUR62044718-RA  93 PCPEFKK-GSCKKGEECEFAHG 113
                     8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MSYEERTPLM VAAQYGSNNI LDFVLQFGGD SVHVNRVSGS DRVTALHCAV AGGSHNSPYV  60
VHRLISASAN TNIVDANECK EERPKKYQYT CVPCPEFKKG SCKKGEECEF AHGVFESWLH  120
PAQYRTRLCK DEIGCARKVC FFAHKREELR PVYASTGSAI PDVNVSSSPG GGFSCTSTPP  180
MSPSFAPLSP SNGASGGAGG MYQGKSGFGV TPPNLQLPGS RLRSSFSARD VEPSPRWNNN  240
NMGRANDMMQ ATNLESAFAS INVARKMSPP SVLDSPLNSP RKLSPPRALD SPKSMAAAML  300
NSRAAAFVKR SQSFIDRTAP GSPMGGNMSN PMSTPMSNWG SPNGTLDWGI HGEELNKLRK  360
SNSFGFRGAN NNNANATRTS PPGFNEPDVS WVNSLVKDEA GAGFLGARSP SYGRSGAGNG  420
AQGQDMCLPW EQMYIEEQLV N*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-57C3H family protein