PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62044613-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 263aa    MW: 29571 Da    PI: 7.7881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62044613-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH51.81.3e-16197222126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yktelC+ +++tGtC+yG++C+FaHg
  AUR62044613-RA 197 YKTELCNKWQETGTCPYGPQCQFAHG 222
                     9************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MDYKNSNKND DYYGSDDIIS NNIKNYCLFS STSTSPPSTP SATAADGSTA SGASLYRARL  60
ILENHLYDEL LSRYRLAITR LKELSREATT LQEENEWLKL TNDDLTRRLN RALSISGQPT  120
NSPTSTVVDD LDEEDERFTL PKSISVRSPG YFKLANSNSP TPVNQSQYPS QHANGTILRV  180
KKEDKAVEMD VFNQGMYKTE LCNKWQETGT CPYGPQCQFA HGVAELRPVI RHPRYKTQVC  240
RMVLSGVSCP YGHRCHFRHS LS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-60C3H family protein