PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62043946-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18228.8 Da PI: 7.8639 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.1 | 6.7e-34 | 47 | 144 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++r kCa+dC+lap+fpa+++++f n+ klFG++n++++l+++ + r+dam++l y A+ara+dPv G++++i +l ++++ +++l+ AUR62043946-RA 47 ACAACRFQRPKCAEDCPLAPHFPAHKHQQFINAYKLFGVNNIVNTLNSVAPWLRDDAMTALKYTADARAKDPVGGCARIIVSLYERIAFYNEQLE 141 7****************************************************************************************999998 PP DUF260 96 llk 98 + AUR62043946-RA 142 DVL 144 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MPPKSNQSTT PSPQTLTTEV TVAFQNPTKS SAEISPNPIP PPPPSNACAA CRFQRPKCAE 60 DCPLAPHFPA HKHQQFINAY KLFGVNNIVN TLNSVAPWLR DDAMTALKYT ADARAKDPVG 120 GCARIIVSLY ERIAFYNEQL EDVLAQIAAV RAIAVTNDDF KFEAFR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-33 | LBD family protein |