PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62043445-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 449aa MW: 47120.7 Da PI: 8.5927

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62043445-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.7e-11	16	42	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG+C y drC+F+H++ AUR62043445-RA 16 PGEPDCIYYLRTGFCGYADRCRFNHPR 42 5789*********************96 PP
2	zf-CCCH	38.7	1.7e-12	66	90	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++Ck++H++ AUR62043445-RA 66 QPICQYFMRTGSCKFGSSCKYHHPR 90 799********************96 PP
3	zf-CCCH	29.9	9.4e-10	111	136	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G +CkF+H+p AUR62043445-RA 111 GEKECTYYIKTGQCKFGMTCKFHHPP 136 7899********************97 PP
4	zf-CCCH	22.2	2.5e-07	272	297	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tG k+G++Ck++H+ AUR62043445-RA 272 PGQPECQHYLKTGDYKFGSSCKYNHP 297 5789*********************8 PP
5	zf-CCCH	35.6	1.6e-11	318	344	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t+ C++fa+ G Ck+G++CkF H++ AUR62043445-RA 318 PGTSTCSYFAQHGVCKFGSTCKFDHPM 344 6899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MWQLGIEESS SYPERPGEPD CIYYLRTGFC GYADRCRFNH PRDRSISPVV RSGRVSGGDL 60 PERAGQPICQ YFMRTGSCKF GSSCKYHHPR QGASSVNPFA LNIYGYPLRP GEKECTYYIK 120 TGQCKFGMTC KFHHPPPSNV PVPTAAPATV PPALASPTVY STPGPTPQQY GVMTGNWPVA 180 RPSMLPGSYI QGPYGPMLIS PGIVPFPSWG PYPGTTPMTA PNTQSVGAGQ FYGLMPMSPS 240 AYTGVTGPYQ AISPSGGGTI NISKEHSYPQ RPGQPECQHY LKTGDYKFGS SCKYNHPSEW 300 VVPETNSSLS PMGLPLRPGT STCSYFAQHG VCKFGSTCKF DHPMGNLSYS PSASSLSDMP 360 VAPYPVGSSI GTLAPSSSSS DLRAEVLSGS NKESASALSS SVSISSGSGG SVLSKSGSIS 420 HSGLQQSSQS STTSTGSKGG PGDGGAPS*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MWQLGIEESS SYPERPGEPD CIYYLRTGFC GYADRCRFNH PRDRSISPVV RSGRVSGGDL  60
PERAGQPICQ YFMRTGSCKF GSSCKYHHPR QGASSVNPFA LNIYGYPLRP GEKECTYYIK  120
TGQCKFGMTC KFHHPPPSNV PVPTAAPATV PPALASPTVY STPGPTPQQY GVMTGNWPVA  180
RPSMLPGSYI QGPYGPMLIS PGIVPFPSWG PYPGTTPMTA PNTQSVGAGQ FYGLMPMSPS  240
AYTGVTGPYQ AISPSGGGTI NISKEHSYPQ RPGQPECQHY LKTGDYKFGS SCKYNHPSEW  300
VVPETNSSLS PMGLPLRPGT STCSYFAQHG VCKFGSTCKF DHPMGNLSYS PSASSLSDMP  360
VAPYPVGSSI GTLAPSSSSS DLRAEVLSGS NKESASALSS SVSISSGSGG SVLSKSGSIS  420
HSGLQQSSQS STTSTGSKGG PGDGGAPS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-123	C3H family protein