PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62043443-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 983aa MW: 113855 Da PI: 8.3448

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62043443-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	201	220	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H AUR62043443-RA 201 CPFHLKTGVCRFGARCSRVH 220 ******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence
MMAVKEDNRQ EVEEREIDKN TIKDNGNGND NSITMATMSR KEKRKALKKM KRKLVRKEIA 60 KKEREEEEAR WNDPEEQMRL LRLEQEEAES MARERMDCFE FKANNENASE ANEDDDWEYI 120 EEGPAEIIWI GNEIIVKKKK IRVPKKASEI LKENQESERP ISNPLAPQSE AFEDYRSAKE 180 VLESVAQQFP NFGTEQDKAH CPFHLKTGVC RFGARCSRVH FYPDKACTIL IKNMYNGPGL 240 AWKQDEGLEH TDEEVKQSFE DFYEDVHTEF FKFGELVNFK VCKNGSSHLR GNLYVHYKSL 300 ESAMLAYQST NGRYFAGKLL TCEFINVTRW RVVICGEYMK SRFKVGHKLG IEFSQSCSRG 360 SACNFIHCFQ NPGGDYEWAD WDKPAPRYWL KKMTALFGYT GDDFTDEVGL RYHSRRSRSR 420 GLDSPHRKSL SDEDDGYKSR RGRHSPHRGD GRETSNLDKE MQKERRTYLD YRCFKHSEID 480 NVDVSEGITD GHRSVGIKRR SKKRKRERVS ADQDKNRKVE AIKMYHSRRS RSRGLDSPHR 540 KSCSNEDDGY KRRRGRYSPR RGDDRETSNL DREMQEERRT CQDSRFDVSE GSTDGQGYVA 600 GTKRSSKKRE RERLFTDQDN KSRKVDVNSS KGEIAEGGVS DRYHEHKSRS SSRQNGVAES 660 ARECRHNKVD KSDVGKSPYG EKNYDEFHRY KDKRVTAKKI EAASLNYNSH GDSQDNEEDE 720 HHSRSKEKSR MMKDEAESSS SASQCSDDSR LVKVEKRQQK KRRKKFENHQ MEISLADTKR 780 NRERIDEEDR HCGHRSAQHH VKEPGMSEVD SNAYRGLVEV DAENFVSIDR SISYCGTCNE 840 TARSDFMNPD VQGGILCRSS DGDKLHDSSN RDSAPERERM LQVYRSDEEA TAPGMVATSL 900 VHTSCKGTDN EAKGELEKAC RLAALKKLEE IRMKKDTQTF HCREPIESLK ICTEENIHGR 960 VLEKANSSKV EVCETSIKRR RI*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence

MMAVKEDNRQ EVEEREIDKN TIKDNGNGND NSITMATMSR KEKRKALKKM KRKLVRKEIA  60
KKEREEEEAR WNDPEEQMRL LRLEQEEAES MARERMDCFE FKANNENASE ANEDDDWEYI  120
EEGPAEIIWI GNEIIVKKKK IRVPKKASEI LKENQESERP ISNPLAPQSE AFEDYRSAKE  180
VLESVAQQFP NFGTEQDKAH CPFHLKTGVC RFGARCSRVH FYPDKACTIL IKNMYNGPGL  240
AWKQDEGLEH TDEEVKQSFE DFYEDVHTEF FKFGELVNFK VCKNGSSHLR GNLYVHYKSL  300
ESAMLAYQST NGRYFAGKLL TCEFINVTRW RVVICGEYMK SRFKVGHKLG IEFSQSCSRG  360
SACNFIHCFQ NPGGDYEWAD WDKPAPRYWL KKMTALFGYT GDDFTDEVGL RYHSRRSRSR  420
GLDSPHRKSL SDEDDGYKSR RGRHSPHRGD GRETSNLDKE MQKERRTYLD YRCFKHSEID  480
NVDVSEGITD GHRSVGIKRR SKKRKRERVS ADQDKNRKVE AIKMYHSRRS RSRGLDSPHR  540
KSCSNEDDGY KRRRGRYSPR RGDDRETSNL DREMQEERRT CQDSRFDVSE GSTDGQGYVA  600
GTKRSSKKRE RERLFTDQDN KSRKVDVNSS KGEIAEGGVS DRYHEHKSRS SSRQNGVAES  660
ARECRHNKVD KSDVGKSPYG EKNYDEFHRY KDKRVTAKKI EAASLNYNSH GDSQDNEEDE  720
HHSRSKEKSR MMKDEAESSS SASQCSDDSR LVKVEKRQQK KRRKKFENHQ MEISLADTKR  780
NRERIDEEDR HCGHRSAQHH VKEPGMSEVD SNAYRGLVEV DAENFVSIDR SISYCGTCNE  840
TARSDFMNPD VQGGILCRSS DGDKLHDSSN RDSAPERERM LQVYRSDEEA TAPGMVATSL  900
VHTSCKGTDN EAKGELEKAC RLAALKKLEE IRMKKDTQTF HCREPIESLK ICTEENIHGR  960
VLEKANSSKV EVCETSIKRR RI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	54	RKEKRKALKKMKRKL
2	47	54	LKKMKRKL
3	499	505	RRSKKRK
4	499	507	RRSKKRKRE
5	760	764	KKRRK
6	760	765	KKRRKK
7	978	982	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-138	C3H family protein