PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62043443-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 983aa MW: 113855 Da PI: 8.3448 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 201 | 220 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H AUR62043443-RA 201 CPFHLKTGVCRFGARCSRVH 220 ******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence |
MMAVKEDNRQ EVEEREIDKN TIKDNGNGND NSITMATMSR KEKRKALKKM KRKLVRKEIA 60 KKEREEEEAR WNDPEEQMRL LRLEQEEAES MARERMDCFE FKANNENASE ANEDDDWEYI 120 EEGPAEIIWI GNEIIVKKKK IRVPKKASEI LKENQESERP ISNPLAPQSE AFEDYRSAKE 180 VLESVAQQFP NFGTEQDKAH CPFHLKTGVC RFGARCSRVH FYPDKACTIL IKNMYNGPGL 240 AWKQDEGLEH TDEEVKQSFE DFYEDVHTEF FKFGELVNFK VCKNGSSHLR GNLYVHYKSL 300 ESAMLAYQST NGRYFAGKLL TCEFINVTRW RVVICGEYMK SRFKVGHKLG IEFSQSCSRG 360 SACNFIHCFQ NPGGDYEWAD WDKPAPRYWL KKMTALFGYT GDDFTDEVGL RYHSRRSRSR 420 GLDSPHRKSL SDEDDGYKSR RGRHSPHRGD GRETSNLDKE MQKERRTYLD YRCFKHSEID 480 NVDVSEGITD GHRSVGIKRR SKKRKRERVS ADQDKNRKVE AIKMYHSRRS RSRGLDSPHR 540 KSCSNEDDGY KRRRGRYSPR RGDDRETSNL DREMQEERRT CQDSRFDVSE GSTDGQGYVA 600 GTKRSSKKRE RERLFTDQDN KSRKVDVNSS KGEIAEGGVS DRYHEHKSRS SSRQNGVAES 660 ARECRHNKVD KSDVGKSPYG EKNYDEFHRY KDKRVTAKKI EAASLNYNSH GDSQDNEEDE 720 HHSRSKEKSR MMKDEAESSS SASQCSDDSR LVKVEKRQQK KRRKKFENHQ MEISLADTKR 780 NRERIDEEDR HCGHRSAQHH VKEPGMSEVD SNAYRGLVEV DAENFVSIDR SISYCGTCNE 840 TARSDFMNPD VQGGILCRSS DGDKLHDSSN RDSAPERERM LQVYRSDEEA TAPGMVATSL 900 VHTSCKGTDN EAKGELEKAC RLAALKKLEE IRMKKDTQTF HCREPIESLK ICTEENIHGR 960 VLEKANSSKV EVCETSIKRR RI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 54 | RKEKRKALKKMKRKL |
2 | 47 | 54 | LKKMKRKL |
3 | 499 | 505 | RRSKKRK |
4 | 499 | 507 | RRSKKRKRE |
5 | 760 | 764 | KKRRK |
6 | 760 | 765 | KKRRKK |
7 | 978 | 982 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-138 | C3H family protein |