PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62043029-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 485aa MW: 50582.3 Da PI: 7.7781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62043029-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.3	8.5e-11	43	69	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG+C y drC+F+H++ AUR62043029-RA 43 PGEPDCIYYLRTGFCGYADRCRFNHPR 69 5789*********************96 PP
2	zf-CCCH	38.6	1.8e-12	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++Ck++H++ AUR62043029-RA 93 QPICQYFMRTGSCKFGSSCKYHHPR 117 799********************96 PP
3	zf-CCCH	29.8	1e-09	138	163	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G +CkF+H+p AUR62043029-RA 138 GEKECTYYIKTGQCKFGMTCKFHHPP 163 7899********************97 PP
4	zf-CCCH	36.3	9.2e-12	299	324	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tG Ck+G++Ck++H+ AUR62043029-RA 299 PGQPECQHYLKTGDCKFGSSCKYNHP 324 5789*********************8 PP
5	zf-CCCH	35.8	1.4e-11	345	371	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t+ C+++a+ G Ck+G++CkF H++ AUR62043029-RA 345 PGTPTCSYYAQHGVCKFGPTCKFDHPM 371 68***********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MESEGTHSDP NPDWDSGHGP ETGLEEPMWQ LGMEEPSSYP ERPGEPDCIY YLRTGFCGYA 60 DRCRFNHPRD RSTSPVVRSG RVSGGGLPER AGQPICQYFM RTGSCKFGSS CKYHHPRQGA 120 SSVNPFALNI YGYPLRPGEK ECTYYIKTGQ CKFGMTCKFH HPPPSNVPVP TAAPATVPPA 180 LASPTVYSTP GPTPQQYGVM TSNWPVARPS MVPGSYIQGL YGPMLISPGI VPFPSWGPYP 240 GTTPITAPNT QSVGAGQFYG LMPMSPSAYT GVTGPYQAIS PSGGGTTSIS KEHSYPQRPG 300 QPECQHYLKT GDCKFGSSCK YNHPSEWVVP ETSSALSPMG LPLRPGTPTC SYYAQHGVCK 360 FGPTCKFDHP MGNLSYSPSA SSLSDMAVAP YPVGSSIGTL APSSSSSDLR AEVISGSNKE 420 SASALSSSVS ISSGSGGSVL SSGSGGSVLS KSGSISHSGI QQSSQSSTTS TGSKGGPGDG 480 GAPS*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MESEGTHSDP NPDWDSGHGP ETGLEEPMWQ LGMEEPSSYP ERPGEPDCIY YLRTGFCGYA  60
DRCRFNHPRD RSTSPVVRSG RVSGGGLPER AGQPICQYFM RTGSCKFGSS CKYHHPRQGA  120
SSVNPFALNI YGYPLRPGEK ECTYYIKTGQ CKFGMTCKFH HPPPSNVPVP TAAPATVPPA  180
LASPTVYSTP GPTPQQYGVM TSNWPVARPS MVPGSYIQGL YGPMLISPGI VPFPSWGPYP  240
GTTPITAPNT QSVGAGQFYG LMPMSPSAYT GVTGPYQAIS PSGGGTTSIS KEHSYPQRPG  300
QPECQHYLKT GDCKFGSSCK YNHPSEWVVP ETSSALSPMG LPLRPGTPTC SYYAQHGVCK  360
FGPTCKFDHP MGNLSYSPSA SSLSDMAVAP YPVGSSIGTL APSSSSSDLR AEVISGSNKE  420
SASALSSSVS ISSGSGGSVL SSGSGGSVLS KSGSISHSGI QQSSQSSTTS TGSKGGPGDG  480
GAPS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-122	C3H family protein