PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042929-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 23182.3 Da PI: 7.7142

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042929-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.3	7.2e-27	2	51	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvt+skRr+g++KK +EL +LCda++ +iifs tgkl++y+ AUR62042929-RA 2 KRIENRTNRQVTYSKRRQGLMKKTKELAILCDAQIGLIIFSGTGKLHTYP 51 79***********************************************8 PP
2	K-box	62.9	1.3e-21	76	159	11	94
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + + e+l el+ L++ i+n ++++R++lGedL++L l+ L++ eq+Le+sl+ iR +Kn+l+ +q+e+l++ke+ lq +n ++ AUR62042929-RA 76 QDNREELFSELQALREAIHNAEQSIRNYLGEDLGPLPLEYLHKHEQKLESSLNVIRVRKNQLMQQQMENLRRKEQLLQTDNGNM 159 456788999**********************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MKRIENRTNR QVTYSKRRQG LMKKTKELAI LCDAQIGLII FSGTGKLHTY PESSNSSLEQ 60 TIQRYLNVQG IQLPVQDNRE ELFSELQALR EAIHNAEQSI RNYLGEDLGP LPLEYLHKHE 120 QKLESSLNVI RVRKNQLMQQ QMENLRRKEQ LLQTDNGNMY HWLMGGGQLQ EQQQQQLMGQ 180 MPFIYGEDQP SSSTVLQLE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	3e-49	MIKC_MADS family protein