PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042926-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 391aa MW: 44755.5 Da PI: 7.5463

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042926-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.2e-17	28	116	2	99
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fk + ++++ +l++p+kf+ e+ + s tl+ +sg+ W+v++ +k+ + +++ +GW +Fv ++g+k g f+vF ++g+s+f v+ AUR62042926-RA 28 FKLM--IGNFEQ-QLRIPRKFV-ECsRAD--LSSSCTLRGQSGNIWKVQI--QKTEKDVLFVDGWGNFVTDHGIKYGCFLVFCYVGDSSF--EVS 112 5555..555555.5******.563433..56689**********..************************************..999 PP EE-S CS B3 96 vfrk 99 vf++ AUR62042926-RA 113 VFDA 116 9986 PP
2	B3	48.4	1.6e-15	274	355	4	87
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 v+++ +v + l++pk+ a +h ++k ++ +++l+ + +sW+v ++++ ++++ ++ GW+ Fv +n+L+e D++vF+l ++ AUR62042926-RA 274 VMKRTHVYRGFHLTIPKEWAVKHLLQK-SDHDVILRVPGVeESWTVGCRWTPSQCQ--FRPGWSTFVLENNLEEHDVCVFELLQK 355 677889999999**********7776.456999996655*****88888877..89*******************8764 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MTYVCETCKA LEEDKYWNEI PPRKHRFFKL MIGNFEQQLR IPRKFVECSR ADLSSSCTLR 60 GQSGNIWKVQ IQKTEKDVLF VDGWGNFVTD HGIKYGCFLV FCYVGDSSFE VSVFDATGCE 120 VEGSHFTRNT NMSLNTSCRS LLHVENDESK GDRTLEADID GSVEAFAVDK EHDSDSSSQE 180 NNFRGSKSAK CKAADNGTGI VHEEEDLESL SDSSHHVKRF HNLSLNVRNR ACQVRQPQKY 240 YKSKRRKVTE QEKQGALSKA ISHMSRRRHM IEIVMKRTHV YRGFHLTIPK EWAVKHLLQK 300 SDHDVILRVP GVEESWTVGC RWTPSQCQFR PGWSTFVLEN NLEEHDVCVF ELLQKGDLGN 360 ENNSVFDVHI FRVVKEVVPL TVLRGIKSSV *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MTYVCETCKA LEEDKYWNEI PPRKHRFFKL MIGNFEQQLR IPRKFVECSR ADLSSSCTLR  60
GQSGNIWKVQ IQKTEKDVLF VDGWGNFVTD HGIKYGCFLV FCYVGDSSFE VSVFDATGCE  120
VEGSHFTRNT NMSLNTSCRS LLHVENDESK GDRTLEADID GSVEAFAVDK EHDSDSSSQE  180
NNFRGSKSAK CKAADNGTGI VHEEEDLESL SDSSHHVKRF HNLSLNVRNR ACQVRQPQKY  240
YKSKRRKVTE QEKQGALSKA ISHMSRRRHM IEIVMKRTHV YRGFHLTIPK EWAVKHLLQK  300
SDHDVILRVP GVEESWTVGC RWTPSQCQFR PGWSTFVLEN NLEEHDVCVF ELLQKGDLGN  360
ENNSVFDVHI FRVVKEVVPL TVLRGIKSSV *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	5e-33	B3 family protein