PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62042556-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 364aa    MW: 39644.1 Da    PI: 8.6307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62042556-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000115173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC++C+k +  +s+ k H +t+
  AUR62042556-RA 51 WKCEKCSKKYAVQSDWKAHTKTC 73
                    58*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
METKTTNEQG GKEKGVHMPG ENMCTPRLSR ALDDLTGIKK HFSRKHGEKK WKCEKCSKKY  60
AVQSDWKAHT KTCGTREYKC DCGTLFSRKD SFITHRAFCD ALAEDNGRTT SSIVPPTLSF  120
TDNPNNKTII DNPSQPGFRH EFVNQGIQDQ ACFPEMVQMA AQTNLFGSSS IPNFMMNNQF  180
SSLDKYATTP STTASLTLSS FPPAKKEEGR EKYNKAGMAE GMSSIYSHDQ NNSSSSSSNP  240
STPMAATALL QKAAQMGSTR SNPYFLGTSL GVTTSSPSTN NITCNEPQQV YHIPIDPTHH  300
QENLSVHNTS NQPSKLPFVS NGKTRDFLGM GAGDGSGRPF SPQDLANFVS ISSAMGLNHS  360
GHK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.13e-40C2H2 family protein