PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042538-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 479aa MW: 53998.3 Da PI: 6.0829

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042538-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.9e-09	367	414	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 ++WT +E lvd+ ++G+g+W+++ +t+ +Rt+ +++++w+++ AUR62042538-RA 367 QPWTLDEVVALVDGMSKFGPGQWTAVKKTFFlsSRRTATDIRDKWRNL 414 79*****************************9**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
VKKDEHYIAD LAYGSSDARH MWAESKEDQA SALYFDANFE DAFKIDDISS VFHYELLAKN 60 GGLNSYMTEE GKGEILCSDF DGILNEDKLT NIPLAVSISH ASEDHYLDVD FDKKVPDLDC 120 KFYDELSVGN LRSEIHSPET SNEEVGVSES SVLVPRCFND QFGKTAKEMH GDLGSKCRYQ 180 MPVEDNMGLK CSLVSDVKYV QATNDDRNTL EIGSSFNDDR DNTHVSFPYV KPPYISIYTH 240 DEVGSASQCT DVDDFCVEDP STDSCAETKI TRARQRRLCR PPQRYLDGTS SLKLRLHNAK 300 KHPSSLLEDK DLGVRSLKKH SRKALEVKAS KTWASDMELD SDEEYEPVES SFNGRKFKRN 360 DRRKSCQPWT LDEVVALVDG MSKFGPGQWT AVKKTFFLSS RRTATDIRDK WRNLVKTNCR 420 SSKGKKDDQR NNSHVLPNPV IERVRELASA PPVLRGRGRG GRKLSALKCP DMPPYLAE*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

VKKDEHYIAD LAYGSSDARH MWAESKEDQA SALYFDANFE DAFKIDDISS VFHYELLAKN  60
GGLNSYMTEE GKGEILCSDF DGILNEDKLT NIPLAVSISH ASEDHYLDVD FDKKVPDLDC  120
KFYDELSVGN LRSEIHSPET SNEEVGVSES SVLVPRCFND QFGKTAKEMH GDLGSKCRYQ  180
MPVEDNMGLK CSLVSDVKYV QATNDDRNTL EIGSSFNDDR DNTHVSFPYV KPPYISIYTH  240
DEVGSASQCT DVDDFCVEDP STDSCAETKI TRARQRRLCR PPQRYLDGTS SLKLRLHNAK  300
KHPSSLLEDK DLGVRSLKKH SRKALEVKAS KTWASDMELD SDEEYEPVES SFNGRKFKRN  360
DRRKSCQPWT LDEVVALVDG MSKFGPGQWT AVKKTFFLSS RRTATDIRDK WRNLVKTNCR  420
SSKGKKDDQR NNSHVLPNPV IERVRELASA PPVLRGRGRG GRKLSALKCP DMPPYLAE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-17	MYB_related family protein