PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042534-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 923aa MW: 101714 Da PI: 7.1767

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042534-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	8.9e-40	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ k+yhrrhkvCe hska+++lv +++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+qa AUR62042534-RA 182 MCQVDSCSEDLSKSKDYHRRHKVCELHSKATKALVGKQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNKRRRKTQA 259 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence
MEEVGTQVAS PLYIHQNIGG RFCEGALIGA KRSLCYNSGS NHHQQQQQHS QIHRSGHGWN 60 PKDWEWDSSH FLARSRPLES DRLRLGSLHE VSTPNNKEVV NPVLSSSFTS KSSSPPHDDQ 120 QGGNSLRLQL GGVGDNNGTG TSFNKTSVGN VQSSNSTEEP VSSLRPNKKV RSGSPGGGNY 180 PMCQVDSCSE DLSKSKDYHR RHKVCELHSK ATKALVGKQM QRFCQQCSRF HPLAEFDEGK 240 RSCRRRLAGH NKRRRKTQAE DTTSPAIQPT DSHKTGYGNL DIVNLLTVLA RGQGALGQSN 300 MDVDAASRST TNLLAVLSAT LAASSPGSLA FFSQKSNPGS CVDKNKSTTM DKDTGSDACK 360 KPSIELQSLG GERSSSSYQS PTEDSDSQVQ DTRTNLPLQL FSSSPGDDSS PNLVTSRRYF 420 SSDSSNPTEE RSHSSAAPVT RKLFPLETAS ESARPVRMSF SEEANVNVEA SRTETSASRM 480 TLELFTMGNK AASNSLQNLP HQAGYTSSSG SDHSPPSFNS DPQKDRTGRI IFKLFDKDPS 540 QLPGALRTQI YNWLSNSPSD MESYIRPGCV VLSIYVSMSS AAWEQLEESF LQRVEALVQD 600 SDFEFWRSGR FSVNIGTQLA VHKDDPFRFV TLWTEGFAFA NLGAQNLTSP GTKIHCAYMG 660 GYSSKEVLKS SDQGLPCEEI RLNEFNVHAA ASSVLGRCFI EVENGVRGNC FPIIIADAKI 720 CQELRLLERE FYEAKDSDVI TDDQANMLQY LLTFSTERDY SALVKTLLDI FVEAESRMDG 780 LSTECVEALS NMHLLHRAVK RSSRKMVDML VHYSAPCSYD IVDALTNDPM QIGPHSWRSL 840 LDDGEVRQRP SLPLDTKQKS CSKCAMRSYS RMPGSHGFLH RPFIHSMLTI AAVCVCVCLF 900 FKSLHVNSVT PFMWDNVDFG AM*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence

MEEVGTQVAS PLYIHQNIGG RFCEGALIGA KRSLCYNSGS NHHQQQQQHS QIHRSGHGWN  60
PKDWEWDSSH FLARSRPLES DRLRLGSLHE VSTPNNKEVV NPVLSSSFTS KSSSPPHDDQ  120
QGGNSLRLQL GGVGDNNGTG TSFNKTSVGN VQSSNSTEEP VSSLRPNKKV RSGSPGGGNY  180
PMCQVDSCSE DLSKSKDYHR RHKVCELHSK ATKALVGKQM QRFCQQCSRF HPLAEFDEGK  240
RSCRRRLAGH NKRRRKTQAE DTTSPAIQPT DSHKTGYGNL DIVNLLTVLA RGQGALGQSN  300
MDVDAASRST TNLLAVLSAT LAASSPGSLA FFSQKSNPGS CVDKNKSTTM DKDTGSDACK  360
KPSIELQSLG GERSSSSYQS PTEDSDSQVQ DTRTNLPLQL FSSSPGDDSS PNLVTSRRYF  420
SSDSSNPTEE RSHSSAAPVT RKLFPLETAS ESARPVRMSF SEEANVNVEA SRTETSASRM  480
TLELFTMGNK AASNSLQNLP HQAGYTSSSG SDHSPPSFNS DPQKDRTGRI IFKLFDKDPS  540
QLPGALRTQI YNWLSNSPSD MESYIRPGCV VLSIYVSMSS AAWEQLEESF LQRVEALVQD  600
SDFEFWRSGR FSVNIGTQLA VHKDDPFRFV TLWTEGFAFA NLGAQNLTSP GTKIHCAYMG  660
GYSSKEVLKS SDQGLPCEEI RLNEFNVHAA ASSVLGRCFI EVENGVRGNC FPIIIADAKI  720
CQELRLLERE FYEAKDSDVI TDDQANMLQY LLTFSTERDY SALVKTLLDI FVEAESRMDG  780
LSTECVEALS NMHLLHRAVK RSSRKMVDML VHYSAPCSYD IVDALTNDPM QIGPHSWRSL  840
LDDGEVRQRP SLPLDTKQKS CSKCAMRSYS RMPGSHGFLH RPFIHSMLTI AAVCVCVCLF  900
FKSLHVNSVT PFMWDNVDFG AM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein