PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62042011-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25651.6 Da PI: 4.6984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 44 | 91 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++ AUR62042011-RA 44 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMK 91 56******.**********965...5***********************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MKPAFQQQQI CSASMLFPFL QRNTSISQTN ERRGRRKQAE PGRFLGVRRR PWGRYAAEIR 60 DPTTKERHWL GTFDTAHEAA LAYDRAALSM KENCLRPAPS ENDPPIISTI VKNTDHNSIT 120 NNNVEYPMSS SSYDPQDHYS FSSLSNTNEE SISGNLSLEI SSNFSDYCDD LAAIINHPLM 180 MEEGCMMEGL YPVIEELPAA SSYFTMPCAG FSSAPYSDDM LDLGYSLF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 9e-40 | ERF family protein |