PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041592-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 396aa MW: 43612.7 Da PI: 8.7914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041592-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H AUR62041592-RA 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	16.8	1.8e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ AUR62041592-RA 137 WVCDKCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MLGGSSSSSA PSSEHVNMGG NSPADNGNSS KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RENPVVKKRV FVCPEPTCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCD KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSSPSNDTT 180 NNNVNVAGPW HNTGLTMTTA TTTMTKPSLS ENLHNLELQL SVSPKATDHE NQSTQLQLSI 240 GSTSDMGEKN ATPETNSKSN KKAASASSPS HHQTTTLKEQ ASEQLKLAMA EKAYAEDARR 300 EAKRQIELAE KEFANAKRIR QQAQAELDKA QTLKDHAMKQ ISATLMQITC HACKQQFNAS 360 PTTVTTTTTA TTYALHLEDQ NSSLAESQVE DDNNM*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MLGGSSSSSA PSSEHVNMGG NSPADNGNSS KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RENPVVKKRV FVCPEPTCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCD KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSSPSNDTT  180
NNNVNVAGPW HNTGLTMTTA TTTMTKPSLS ENLHNLELQL SVSPKATDHE NQSTQLQLSI  240
GSTSDMGEKN ATPETNSKSN KKAASASSPS HHQTTTLKEQ ASEQLKLAMA EKAYAEDARR  300
EAKRQIELAE KEFANAKRIR QQAQAELDKA QTLKDHAMKQ ISATLMQITC HACKQQFNAS  360
PTTVTTTTTA TTYALHLEDQ NSSLAESQVE DDNNM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-122	C2H2 family protein