PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62041175-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26836 Da PI: 7.432 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.1e-40 | 29 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael AUR62041175-RA 29 PCGACKFLRRKCTNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRQDAVVTILYEAQARLSDPVYGCVSTILALQQQVATLQAEL 123 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ AUR62041175-RA 124 AMVQSQ 129 **9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MPDHHDGRRK LGKRASAAVS SDQEGPLAPC GACKFLRRKC TNGCIFAPHF GSDQGAARFA 60 AVHKVFGASN VSKLLLHIPM NRRQDAVVTI LYEAQARLSD PVYGCVSTIL ALQQQVATLQ 120 AELAMVQSQV INSRLAMANA LQTSQQQLGN GYEVMHLPLN HHVHHQPAYS NNSSASNNLL 180 NMNTSATTTG YVSSTYNNDF SAVADASTAP SPHSLDLLRL SRPSQDDDED DEQISRNHIA 240 FANHLIH* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-58 | LBD family protein |