PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62040881-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 135aa MW: 14762.7 Da PI: 7.0157 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 31 | 50 | 7 | 26 |
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +f+++tG+Ck+G++C+F+H+ AUR62040881-RA 31 KFYMKTGECKFGEKCRFHHP 50 79*****************8 PP | |||||||
2 | zf-CCCH | 42.5 | 1e-13 | 79 | 103 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C+f+++tGtC+yG++CkF H+p AUR62040881-RA 79 VEHCPFYMKTGTCSYGANCKFDHPP 103 567********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence |
MWVVRVFKGI ISGGVVAVQV QGVLGLHRGS KFYMKTGECK FGEKCRFHHP IDRSAPTRNQ 60 TLEQNVKFTL AGLPRREGVE HCPFYMKTGT CSYGANCKFD HPPPGEVMAV AGQETSTKAE 120 EEETEDGENV ATAE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-36 | C3H family protein |