PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040464-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 497aa MW: 55468.9 Da PI: 4.4155

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040464-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.8	8.7e-16	10	48	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +ien+ +r+++f + + +++KKA E S+LCd+ v+vi+f AUR62040464-RA 10 FIENQKKRNTSFRQKKRTLIKKAREFSILCDVPVCVIVF 48 79***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MGRAKLARVF IENQKKRNTS FRQKKRTLIK KAREFSILCD VPVCVIVFPF VEGNKKVVQP 60 EIFSYKGEQE PQEIVNSDDS TANNPELGRE MINRYLAYPK DFQKSKRSLN LSDVLKDVNV 120 EKSSSIDQDL HNYTNLSKFT NDQLIELLGK LDHKIDSVKS RIDVIKNVSK NDGFDAKQQE 180 IEVLSDDDGF LLSDLDMDLD YDAMFEDLKG LTTPGYEGFY NLDMMGVTPN CIEIDQGSRF 240 ADNYPLQCAL MMGTTPSPTN NTDNNHGSRF ADNYLLECIP MISTTLTNNT DNNQESIFDG 300 NYPLQGAPMM GTTSTSYTDN NQGFLQCVPM MGTTSTSYTD NNQGSSYADS YPLQCAPMMG 360 ITSTSYTDKN QGLSYADSYP LQCAPMMGIT STSYTDKNQG LSYADSYPLQ CAPMMGTTST 420 SYTDNNQGSD NYPLQGNSMM VHSIYNNGDL GPQFADNYPL QCNLMMNRSI YNADLGQRFV 480 DNCLLQHGYP MIGHAV*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MGRAKLARVF IENQKKRNTS FRQKKRTLIK KAREFSILCD VPVCVIVFPF VEGNKKVVQP  60
EIFSYKGEQE PQEIVNSDDS TANNPELGRE MINRYLAYPK DFQKSKRSLN LSDVLKDVNV  120
EKSSSIDQDL HNYTNLSKFT NDQLIELLGK LDHKIDSVKS RIDVIKNVSK NDGFDAKQQE  180
IEVLSDDDGF LLSDLDMDLD YDAMFEDLKG LTTPGYEGFY NLDMMGVTPN CIEIDQGSRF  240
ADNYPLQCAL MMGTTPSPTN NTDNNHGSRF ADNYLLECIP MISTTLTNNT DNNQESIFDG  300
NYPLQGAPMM GTTSTSYTDN NQGFLQCVPM MGTTSTSYTD NNQGSSYADS YPLQCAPMMG  360
ITSTSYTDKN QGLSYADSYP LQCAPMMGIT STSYTDKNQG LSYADSYPLQ CAPMMGTTST  420
SYTDNNQGSD NYPLQGNSMM VHSIYNNGDL GPQFADNYPL QCNLMMNRSI YNADLGQRFV  480
DNCLLQHGYP MIGHAV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-11	M-type_MADS family protein